Browse Element(s) Details


Os.15751.1.S1_at

Description gb:AK109755.1
DB_XREF= gi:32994964
TID=Os.15751.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.15751 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-146-G02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-146-G02, full insert sequence.
FL= gb:AK109755.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0394911/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g03900Os.11655.1.S1_at11/113+1754678..1759240RWP-RK domain containing protein, expressed
LOC_Os03g03910Os.7986.1.S1_at11/113+1765991..1769149Catalase-1, putative, expressed
LOC_Os03g03920Os.5425.1.S1_at9/113+1769942..1774716Ubiquitin family protein, expressed
LOC_Os03g03930Os.24297.1.A1_at11/113+1777041..1782663polyA polymerase family protein, expressed
LOC_Os03g03949Os.15751.1.S1_at11/113+1782819..1791636expressed protein
LOC_Os03g03949Os.45957.4.S1_x_at1/113+1782819..1791636expressed protein
LOC_Os03g03970NANA3+1791816..1792184retrotransposon protein, putative, unclassified
LOC_Os03g03980OsAffx.24957.1.S1_at11/113+1793782..1794833expressed protein
LOC_Os03g03990Os.16968.1.S1_at10/113+1795856..1797181'chromo' domain containing protein, expressed
LOC_Os03g04000Os.18327.1.S1_at11/113+1800611..1804371AMP-binding enzyme family protein, expressed
LOC_Os03g04010OsAffx.24958.1.S1_at11/113+1805566..1805960hypothetical protein
LOC_Os03g04020Os.21349.1.S1_at11/113+1809675..1811413Rare lipoprotein A like double-psi beta-barrel containing protein, expressed
LOC_Os03g04030Os.52180.1.S1_at11/113+1814950..1818869HVA22-like protein i, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15751.1.S1_at--420--8331Chr03:1790682..1790706 (25 bp)
GGCTCCTGAATGTGCAGCTGCTGGT
LOC_Os03g03949
Os.15751.1.S1_at--281--10251Chr03:1791112..1791136 (25 bp)
TTTGGGTGGCGACCAGGAACTTCCA
LOC_Os03g03949
Os.15751.1.S1_at--624--8171Chr03:1791127..1791151 (25 bp)
GGAACTTCCAATCCTTGCTGAAGAA
LOC_Os03g03949
Os.15751.1.S1_at--135--5251Chr03:1791149..1791173 (25 bp)
GAATCTGGTTTCACTGTTGAGGGAA
LOC_Os03g03949
Os.15751.1.S1_at--1141--7811Chr03:1791188..1791212 (25 bp)
GGTCAGACACGAGAGCAAGTTTCAT
LOC_Os03g03949
Os.15751.1.S1_at--505--911Chr03:1791263..1791287 (25 bp)
AGGCTGACTACAACAATTCCGCATG
LOC_Os03g03949
Os.15751.1.S1_at--396--8951Chr03:1791286..1791310 (25 bp)
TGACATACCGTCACACCGAGGGAAG
LOC_Os03g03949
Os.15751.1.S1_at--1092--5291Chr03:1791307..1791331 (25 bp)
GAAGGTTTTCGTTCCACGGTTGCAT
LOC_Os03g03949
Os.15751.1.S1_at--686--6671Chr03:1791325..1791349 (25 bp)
GTTGCATAGCCTACCTAATACAGCC
LOC_Os03g03949
Os.15751.1.S1_at--881--9091Chr03:1791378..1791402 (25 bp)
TGCTCTTCTCTCATACGGAGATTGG
LOC_Os03g03949
Os.15751.1.S1_at--317--8751Chr03:1791474..1791498 (25 bp)
TGTAAAAGGGCGCATTGCTTCTCTT
LOC_Os03g03949
Target Sequence 
GGCTCCTGAATGTGCAGCTGCTGGTATAGAAGGTTTTCCGACATGGATTATCAACGGCAAGGTTTTGGGTGGCGACCAGG
AACTTCCAATCCTTGCTGAAGAATCTGGTTTCACTGTTGAGGGAACCGAGCAATCATAAGGTCAGACACGAGAGCAAGTT
TCATTCAATTGAAGGCGAGTGTTTTATGGNTTTTAGTGAAGAACTCAGGTTGTGAAGGCTGACTACAACAATTCCGCATG
ACATACCGTCACACCGAGGGAAGGTTTTCGTTCCACGGTTGCATAGCCTACCTAATACAGCCCCTAACCACTGTAATAAT
CAGTAAAAGCTGCTCTTCTCTCATACGGAGATTGGGAGATGATAGAAGAAGCCCAAATGAGAGGTGTTGTATAATCATTT
TGTAGTATGTAGATTGTGATGTAAAATGTAAAAGGGCGCATTGCTTCTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15751.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis