Browse Element(s) Details


Os.49690.1.S1_s_at

Description gb:AF193835.1
DB_XREF= gi:8132684
GEN=LRK1
TID=Os.49690.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49690 (NCBI UniGene Cluster)
DEF=Oryza sativa LRK1 protein (LRK1) mRNA, complete cds.
PROD=LRK1 protein
FL= gb:AF193835.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0419011/11Receptor protein kinase CLAVATA1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g04180Os.28079.1.S1_x_at11/117+1787073..1792926amino acid permease 6, putative, expressed
LOC_Os07g04180Os.28079.2.S1_s_at11/117+1787073..1792926amino acid permease 6, putative, expressed
LOC_Os07g04180Os.50789.1.S1_x_at11/117+1787073..1792926amino acid permease 6, putative, expressed
LOC_Os07g04180Os.28079.2.S1_x_at8/117+1787073..1792926amino acid permease 6, putative, expressed
LOC_Os07g04180Os.21238.1.S1_at1/117+1787073..1792926amino acid permease 6, putative, expressed
LOC_Os07g04190Os.49690.1.S1_s_at11/117+1810500..1814306Receptor protein kinase CLAVATA1 precursor, putative, expressed
LOC_Os07g04190Os.49690.1.S1_at1/117+1810500..1814306Receptor protein kinase CLAVATA1 precursor, putative, expressed
LOC_Os07g04200NANA7+1832133..1834007UDP-3-O- glucosamine N-acyltransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0007172biological_processsignal complex formation
GO:0009934biological_processregulation of meristem organization
GO:0030154biological_processcell differentiation
GO:0016020cellular_componentmembrane
GO:0016021cellular_componentintegral to membrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004702molecular_functionreceptor signaling protein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49690.1.S1_s_at--409--6873Chr04:23237420..23237439 (20 bp)
GTTTGGGTTTCTAATCTGGAATGCT
NONE
Os.49690.1.S1_s_at--455--7471Chr07:1810943..1810967 (25 bp)
GTGTGTGGTATGTAGGCCTTCGCAT
LOC_Os07g04190
Os.49690.1.S1_s_at--252--31Chr07:1810905..1810929 (25 bp)
ATTGTAGGCCACTGAATTTCTTGTG
LOC_Os07g04190
Os.49690.1.S1_s_at--82--7491Chr07:1810883..1810907 (25 bp)
GTGTGGCATGTATCTTTGGTATCTT
LOC_Os07g04190
Os.49690.1.S1_s_at--376--10171Chr07:1810840..1810864 (25 bp)
TATAAGCTTCTTAACCTCCAGTTTC
LOC_Os07g04190
Os.49690.1.S1_s_at--172--1531Chr07:1810691..1810715 (25 bp)
AGCATAACCTTTTAACTGTGGAATC
LOC_Os07g04190
Os.49690.1.S1_s_at--514--1052Chr12:2706256..2706321 (24 bp)
AGGTGTTCTGTTATCTGTACTTGAG
NONE
Os.49690.1.S1_s_at--892--5011Chr07:1810611..1810635 (25 bp)
GCAGGTGTTGCATTCAAGAGTTGTA
LOC_Os07g04190
Os.49690.1.S1_s_at--98--2491Chr07:1810596..1810620 (25 bp)
AAGAGTTGTACTCAAAAACCTCAAG
LOC_Os07g04190
Os.49690.1.S1_s_at--927--2191Chr07:1810557..1810581 (25 bp)
ACAAATGTACTTTCACATCTGGTGA
LOC_Os07g04190
Os.49690.1.S1_s_at--410--7771Chr07:1810537..1810561 (25 bp)
GGTGAACAAGAACCACTCATTCAGA
LOC_Os07g04190
Target Sequence 
GTTTGGGTTTCTAATCTGGAATGCTTAGGGTGTGTGGTATGTAGGCCTTCGCATTTAGGGTGTGGAAGATTGTAGGCCAC
TGAATTTCTTGTGTGGCATGTATCTTTGGTATCTTAGGTATTTGTGTTGTAAATATAAGCTTCTTAACCTCCAGTTTCCT
CGTACAATCAAGAAACTTTGTAGGGAGTAGAGAGCTTAGTTATGTGGATCCATTTTAGCTTCTTTTTTTTTTCTTTCCAT
CTGAGCCCCAAAATGTCAAATGCTATCTCCATCCAATGTGACAGCATAACCTTTTAACTGTGGAATCATGATTATCAAGG
TGTTCTGTTATCTGTACTTGAGAGTGTAAACTGCTGAAGTGAGCAGGTGTTGCATTCAAGAGTTGTACTCAAAAACCTCA
AGTCTGAAGGCAAAGAACAAATGTACTTTCACATCTGGTGAACAAGAACCACTCATTCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49690.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis