Browse Element(s) Details


Os.49761.1.S1_at

Description gb:AB003324.1
DB_XREF= gi:5295981
TID=Os.49761.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.49761 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) mRNA for MADS box-like protein, complete cds, clone:E31254.
PROD=MADS box-like protein
FL= gb:AY551926.1 gb:AY551922.1 gb:AB003324.1 gb:AY551917.1 gb:AK100227.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5417011/11MADS-box protein CMB1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g54130Os.51579.1.S1_at11/113+30973787..30975621Papain family cysteine protease containing protein, expressed
LOC_Os03g54130Os.11707.1.A1_at11/113+30973787..30975621Papain family cysteine protease containing protein, expressed
LOC_Os03g54150Os.17640.1.S1_at11/113+30977948..30982102expressed protein
LOC_Os03g54160Os.2348.1.S1_a_at11/113+30982122..30991960Floral homeotic protein APETALA1, putative, expressed
LOC_Os03g54160Os.50429.1.S1_at11/113+30982122..30991960Floral homeotic protein APETALA1, putative, expressed
LOC_Os03g54160Os.2348.1.S1_at10/113+30982122..30991960Floral homeotic protein APETALA1, putative, expressed
LOC_Os03g54160Os.2348.2.S1_x_at6/113+30982122..30991960Floral homeotic protein APETALA1, putative, expressed
LOC_Os03g54170Os.49761.1.S1_at11/113+30998772..31005425MADS-box protein CMB1, putative, expressed
LOC_Os03g54180NANA3+31010290..31010564hypothetical protein
LOC_Os03g54190OsAffx.13487.1.S1_at11/113+31014511..31016225expressed protein
LOC_Os03g54200Os.7237.1.S1_a_at11/113+31028016..31030309expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009908biological_processflower development
GO:0010076biological_processmaintenance of floral meristem identity
GO:0048440biological_processcarpel development
GO:0048441biological_processpetal development
GO:0048442biological_processsepal development
GO:0048443biological_processstamen development
GO:0048481biological_processovule development
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49761.1.S1_at--6--2031Chr03:31000891..31000911 (21 bp)
ACAAAGGAACCTTCTAGGTGAGGAT
LOC_Os03g54170
Os.49761.1.S1_at--246--1051Chr03:31000876..31000900 (25 bp)
AGGTGAGGATTTAGCTCCACTGGCT
LOC_Os03g54170
Os.49761.1.S1_at--436--4791Chr03:31000863..31000887 (25 bp)
GCTCCACTGGCTACAAATGAACTTG
LOC_Os03g54170
Os.49761.1.S1_at--758--671Chr03:31000847..31000871 (25 bp)
ATGAACTTGAGCAGCTTGAGAGTCA
LOC_Os03g54170
Os.49761.1.S1_at--721--10771Chr03:31000832..31000856 (25 bp)
TTGAGAGTCAAGTAGTCAGAACCTT
LOC_Os03g54170
Os.49761.1.S1_at--617--7091Chr03:31000818..31000842 (25 bp)
GTCAGAACCTTGAAGCAAATCAGAT
LOC_Os03g54170
Os.49761.1.S1_at--410--5571Chr03:31000083..31000104 (22 bp)
GAAAGACTCAGGTACTACTTGATGA
LOC_Os03g54170
Os.49761.1.S1_at--1047--2011Chr03:31000070..31000094 (25 bp)
ACTACTTGATGAACTCTGCGACCTA
LOC_Os03g54170
Os.49761.1.S1_at--254--4851Chr03:30999900..30999924 (25 bp)
GCTACAAGATGCAAACAGGGTCCTG
LOC_Os03g54170
Os.49761.1.S1_at--101--2431Chr03:30999475..30999899 (25 bp)
AAAAGGAAGCTTGACGAGATCGACG
LOC_Os03g54170
Os.49761.1.S1_at--564--6031Chr03:30999460..30999484 (25 bp)
GAGATCGACGTAGAGGCAGCTCCCC
LOC_Os03g54170
Target Sequence 
ACAAAGGAACCTTCTAGGTGAGGATTTAGCTCCACTGGCTACAAATGAACTTGAGCAGCTTGAGAGTCAAGTAGTCAGAA
CCTTGAAGCAAATCAGATCAAGAAAGACTCAGGTACTACTTGATGAACTCTGCGACCTAAAGAGAAAGGAACAAATGCTA
CAAGATGCAAACAGGGTCCTGAAAAGGAAGCTTGACGAGATCGACGTAGAGGCAGCTCCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49761.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis