Browse Element(s) Details


Os.2348.1.S1_at

Description gb:AY332478.1
DB_XREF= gi:33242920
GEN=AGL10
TID=Os.2348.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2348 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) MADS box protein (AGL10) mRNA, complete cds.
PROD=MADS box protein
FL= gb:AY332478.1 gb:AF139664.2 gb:AB041020.1 gb:AF058697.1 gb:AY551916.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5416010/11Floral homeotic protein APETALA1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g54084OsAffx.25710.1.S1_at11/113+30955132..30964347Phytochrome C, putative, expressed
LOC_Os03g54084Os.24622.1.A1_at11/113+30955132..30964347Phytochrome C, putative, expressed
LOC_Os03g54084Os.3383.1.S1_a_at10/113+30955132..30964347Phytochrome C, putative, expressed
LOC_Os03g54100Os.14641.1.S1_at7/113+30965240..30967857calcium-activated outward-rectifying potassium channel 5,chloroplast precursor, putative, expressed
LOC_Os03g54114OsAffx.25711.1.S1_at10/113+30970384..30973078hypothetical protein
LOC_Os03g54130Os.51579.1.S1_at11/113+30973787..30975621Papain family cysteine protease containing protein, expressed
LOC_Os03g54130Os.11707.1.A1_at11/113+30973787..30975621Papain family cysteine protease containing protein, expressed
LOC_Os03g54150Os.17640.1.S1_at11/113+30977948..30982102expressed protein
LOC_Os03g54160Os.2348.1.S1_a_at11/113+30982122..30991960Floral homeotic protein APETALA1, putative, expressed
LOC_Os03g54160Os.50429.1.S1_at11/113+30982122..30991960Floral homeotic protein APETALA1, putative, expressed
LOC_Os03g54160Os.2348.1.S1_at10/113+30982122..30991960Floral homeotic protein APETALA1, putative, expressed
LOC_Os03g54160Os.2348.2.S1_x_at6/113+30982122..30991960Floral homeotic protein APETALA1, putative, expressed
LOC_Os03g54170Os.49761.1.S1_at11/113+30998772..31005425MADS-box protein CMB1, putative, expressed
LOC_Os03g54180NANA3+31010290..31010564hypothetical protein
LOC_Os03g54190OsAffx.13487.1.S1_at11/113+31014511..31016225expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009908biological_processflower development
GO:0009911biological_processpositive regulation of flower development
GO:0009933biological_processmeristem organization
GO:0010154biological_processfruit development
GO:0045941biological_processpositive regulation of transcription
GO:0048481biological_processovule development
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2348.1.S1_at--491--4791Chr03:30983197..30983221 (25 bp)
GCTCCTTCCTACAGCTGGTGGAGAA
LOC_Os03g54160
Os.2348.1.S1_at--218--2971Chr03:30983146..30983170 (25 bp)
AATGGGACCAGACACAACCTCAAAC
LOC_Os03g54160
Os.2348.1.S1_at--1005--2591Chr03:30983089..30983113 (25 bp)
AAGCCCTTCCAACAACTAATATCAG
LOC_Os03g54160
Os.2348.1.S1_at--445--251Chr03:30982582..30982602 (21 bp)
ATATCAGTAACTACCCTGCAGCAGC
LOC_Os03g54160
Os.2348.1.S1_at--1049--6271Chr03:30982541..30982565 (25 bp)
GATGTAGCAGCAGGGCAGCCACAGC
LOC_Os03g54160
Os.2348.1.S1_at--554--2151Chr03:30982521..30982545 (25 bp)
ACAGCATGTTCGCATTGGGCTGCCA
LOC_Os03g54160
Os.2348.1.S1_at--675--2091Chr03:30982480..30982504 (25 bp)
ACATCAACGGCTAAGGAGGCTTCAG
LOC_Os03g54160
Os.2348.1.S1_at--240--6211NONE
GAGGCTTCAGAGTCCATACCAGTAA
NONE
Os.2348.1.S1_at--1040--3071Chr03:30982443..30982467 (25 bp)
AATCACAAGTTGCAACCTGACCCGG
LOC_Os03g54160
Os.2348.1.S1_at--958--3831Chr03:30982409..30982433 (25 bp)
CTGCTGCTCTGGTTTACTACTAGTA
LOC_Os03g54160
Os.2348.1.S1_at--1067--2031Chr03:30982385..30982409 (25 bp)
ACTATTGTCATCTTGCGGTTGCGAG
LOC_Os03g54160
Target Sequence 
GCTCCTTCCTACAGCTGGTGGAGAAGCAGAAAGTCCAGAAGCAACAAGTGCAATGGGACCAGACACAACCTCAAACAAGT
TCCTCATCATCCTCCTTCATGATGAGGGAAGCCCTTCCAACAACTAATATCAGTAACTACCCTGCAGCAGCTGGCGAAAG
GATAGAGGATGTAGCAGCAGGGCAGCCACAGCATGTTCGCATTGGGCTGCCACCATGGATGCTGAGCCACATCAACGGCT
AAGGAGGCTTCAGAGTCCATACCAGTAATCACAAGTTGCAACCTGACCCGGTCCGGTCGCCTGCTGCTCTGGTTTACTAC
TAGTACTATTGTCATCTTGCGGTTGCGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2348.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis