Browse Element(s) Details


Os.14641.1.S1_at

Description gb:AK069303.1
DB_XREF= gi:32979327
TID=Os.14641.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.14641 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023012L24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023012L24, full insert sequence.
FL= gb:AK069303.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g541007/11calcium-activated outward-rectifying potassium channel 5,chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g54050OsAffx.3606.1.S1_s_at11/113+30940306..30942347heavy metal-associated domain containing protein, expressed
LOC_Os03g54050Os.32126.1.S1_x_at11/113+30940306..30942347heavy metal-associated domain containing protein, expressed
LOC_Os03g54050Os.32126.2.S1_at11/113+30940306..30942347heavy metal-associated domain containing protein, expressed
LOC_Os03g54059NANA3+30945684..30947253expressed protein
LOC_Os03g54070NANA3+30949559..30949912hypothetical protein
LOC_Os03g54084OsAffx.25710.1.S1_at11/113+30955132..30964347Phytochrome C, putative, expressed
LOC_Os03g54084Os.24622.1.A1_at11/113+30955132..30964347Phytochrome C, putative, expressed
LOC_Os03g54084Os.3383.1.S1_a_at10/113+30955132..30964347Phytochrome C, putative, expressed
LOC_Os03g54100Os.14641.1.S1_at7/113+30965240..30967857calcium-activated outward-rectifying potassium channel 5,chloroplast precursor, putative, expressed
LOC_Os03g54114OsAffx.25711.1.S1_at10/113+30970384..30973078hypothetical protein
LOC_Os03g54130Os.51579.1.S1_at11/113+30973787..30975621Papain family cysteine protease containing protein, expressed
LOC_Os03g54130Os.11707.1.A1_at11/113+30973787..30975621Papain family cysteine protease containing protein, expressed
LOC_Os03g54150Os.17640.1.S1_at11/113+30977948..30982102expressed protein
LOC_Os03g54160Os.2348.1.S1_a_at11/113+30982122..30991960Floral homeotic protein APETALA1, putative, expressed
LOC_Os03g54160Os.50429.1.S1_at11/113+30982122..30991960Floral homeotic protein APETALA1, putative, expressed
LOC_Os03g54160Os.2348.1.S1_at10/113+30982122..30991960Floral homeotic protein APETALA1, putative, expressed
LOC_Os03g54160Os.2348.2.S1_x_at6/113+30982122..30991960Floral homeotic protein APETALA1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005774cellular_componentvacuolar membrane
GO:0005216molecular_functionion channel activity
GO:0005509molecular_functioncalcium ion binding
GO:0015269molecular_functioncalcium-activated potassium channel activity
GO:0015271molecular_functionoutward rectifier potassium channel activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14641.1.S1_at--280--2431Chr03:30965531..30965555 (25 bp)
AAAAGCTCGATGTCGACCACTCTGG
LOC_Os03g54100
Os.14641.1.S1_at--1080--2411Chr03:30965461..30965485 (25 bp)
AAAACAGATGCCTTTTCCATTGATC
LOC_Os03g54100
Os.14641.1.S1_at--1025--10271Chr03:30965417..30965441 (25 bp)
TTTGCTTCCGCTAATTATCACCTAT
LOC_Os03g54100
Os.14641.1.S1_at--515--9671Chr03:30965400..30965424 (25 bp)
TCACCTATACTCTATCTAATTGCCC
LOC_Os03g54100
Os.14641.1.S1_at--1022--1411Chr03:30965351..30965375 (25 bp)
AGAAATGAGTGGTCCTTACCTCCTA
LOC_Os03g54100
Os.14641.1.S1_at--49--6451Chr03:30965312..30965336 (25 bp)
GATCAGCTCCTGAACATGTGTAAGA
LOC_Os03g54100
Os.14641.1.S1_at--519--5911Chr03:30965263..30965287 (25 bp)
GAGCTCACACACCTGCATATATGAA
LOC_Os03g54100
Os.14641.1.S1_at--559--2991Chr03:30965210..30965234 (25 bp)
AATGTTTTCGGCTTGTTATGTGCAA
NONE
Os.14641.1.S1_at--743--10491Chr03:30964920..30964944 (25 bp)
TTAACTCCATAACTGCAACTCTGCA
NONE
Os.14641.1.S1_at--593--2531Chr03:30965049..30965073 (25 bp)
AACTCGATAAGCTACTTTTCAGTCA
NONE
Os.14641.1.S1_at--735--631Chr03:30965019..30965043 (25 bp)
ATGCTTTCGGCTTGTTATGTGCAAA
NONE
Target Sequence 
AAAAGCTCGATGTCGACCACTCTGGCACTCTCTCCCCATATGACCTGACCCTAGCNCAATCTGCTCAGTGAAAACAGATG
CCTTTTCCATTGATCTGNTGTTTCAACGGTTTCCTTTGCTTCCGCTAATTATCACCTATACTCTATCTAATTGCCCNCGG
GTAATTCAGTAAGTAACAAAAGAAATGAGTGGTCCTTACCTCCTACATCTAACATAGTGGATCAGCTCCTGAACATGTGT
AAGAGACAAGTATTTGTGAAGTAACACCGAGCTCACACACCTGCATATATGAAATTCGATAAGCTACTTTTCAGTCATTG
CAATGTTTTCGGCTTGTTATGTGCAAATGATAGGTTGTGTGGGTGTAGATTTCACCTGGAATTTAAGCAACCTTTCCTTA
GTTTTGTTGCCCGTTCTTCTTAACTCCATAACTGCAACTCTGCAAGGAAAAAAGGCTGATGATGGCTGGAGACTATATAT
GAAACTCGATAAGCTACTTTTCAGTCAATGCAATGCTTTCGGCTTGTTATGTGCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14641.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis