Browse Element(s) Details


Os.49830.1.S1_at

Description gb:AK111808.1
DB_XREF= gi:37988471
TID=Os.49830.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.49830 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-129-C03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013114D05, full insert sequence.
FL= gb:AK112117.1 gb:AK111808.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0552011/11Myb-like DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g05490Os.10261.1.S1_at11/118+2917873..2922169tyrosyl-tRNA synthetase family protein, expressed
LOC_Os08g05500OsAffx.31174.4.S1_x_at9/118+2924894..2926622retrotransposon protein, putative, unclassified
LOC_Os08g05500OsAffx.31174.5.S1_x_at7/118+2924894..2926622retrotransposon protein, putative, unclassified
LOC_Os08g05510OsAffx.27508.78.S1_s_at11/118+2928448..2933764myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os08g05520Os.49830.1.S1_at11/118+2942209..2945028Myb-like DNA-binding domain containing protein, expressed
LOC_Os08g05530Os.25436.1.S1_at11/118+2958908..2961444small nuclear ribonucleoprotein E, putative, expressed
LOC_Os08g05530OsAffx.16839.1.S1_s_at9/118+2958908..2961444small nuclear ribonucleoprotein E, putative, expressed
LOC_Os08g05540OsAffx.5717.1.S1_at11/118+2962018..2962695expressed protein
LOC_Os08g05550Os.36897.1.A1_at11/118+2962962..2965420hypothetical protein
LOC_Os08g05560Os.53532.1.S1_at11/118+2966257..2970070Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009411biological_processresponse to UV
GO:0009699biological_processphenylpropanoid biosynthesis
GO:0010119biological_processregulation of stomatal movement
GO:0010214biological_processseed coat development
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016564molecular_functiontranscriptional repressor activity
GO:0016566molecular_functionspecific transcriptional repressor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49830.1.S1_at--1003--3551Chr08:2942780..2942804 (25 bp)
CATCAGCATCACCATGAGCATGAGC
LOC_Os08g05520
Os.49830.1.S1_at--1094--1151Chr08:2942697..2942721 (25 bp)
AGTACTAACATCATCCAACTTGGAG
LOC_Os08g05520
Os.49830.1.S1_at--177--9551Chr08:2942655..2942679 (25 bp)
TCATTCCCTCCTTTTTATGGGACCA
LOC_Os08g05520
Os.49830.1.S1_at--1008--10391Chr08:2942539..2942563 (25 bp)
TTTTGCATCTCACAACATCTGATCC
LOC_Os08g05520
Os.49830.1.S1_at--712--3551Chr08:2942524..2942548 (25 bp)
CATCTGATCCCATCTCTGATCTGAT
LOC_Os08g05520
Os.49830.1.S1_at--856--8831Chr08:2942486..2942510 (25 bp)
TGATCAATCTAGCTCTCACTACTAC
LOC_Os08g05520
Os.49830.1.S1_at--1113--9951Chr08:2942464..2942488 (25 bp)
TACCCCATCTGATCTGTCTATACAT
LOC_Os08g05520
Os.49830.1.S1_at--172--6811Chr08:2942428..2942452 (25 bp)
GTTTTGCAAATTAAAGGCGCGCGTA
LOC_Os08g05520
Os.49830.1.S1_at--753--891Chr08:2942414..2942438 (25 bp)
AGGCGCGCGTAATTTATTGTGTTTT
LOC_Os08g05520
Os.49830.1.S1_at--327--10391Chr08:2942382..2942406 (25 bp)
TTTTCTATCTCTCTCCAAGAGCTTT
LOC_Os08g05520
Os.49830.1.S1_at--320--9831Chr08:2942283..2942307 (25 bp)
TAAAGAGACCACCTTGTATGAGTGC
LOC_Os08g05520
Target Sequence 
CATCAGCATCACCATGAGCATGAGCATGAAAATCATCAGTGGGATGAAGAAGAAGCACAGCATCTGCTGATGTGGGATCA
AGAAGTACTAACATCATCCAACTTGGAGGCCATGCAAAGTGGTGCTCATTCCCTCCTTTTTATGGGACCAAATGACCATG
ATTAAGTTGGTAATAATAACCTATGTCTACCCCCCCCCCAATTTTTTTTCTTTTTGGGAAAAAAAAACTTGCATGTGCAT
ATTTTGCATCTCACAACATCTGATCCCATCTCTGATCTGATCTTGATCTCCCTTTGATCAATCTAGCTCTCACTACTACC
CCATCTGATCTGTCTATACATGAAATAATGAGGTTTTGCAAATTAAAGGCGCGCGTAATTTATTGTGTTTTGGATTTTTT
TTCTATCTCTCTCCAAGAGCTTTTATTTTGGTTTTTTTACTTTTTTTTTTGGATTGGAGTGTGAAGACTGAATAGTGTGT
GTCAATTGGGTTTTTTGTAAAGAGACCACCTTGTATGAGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49830.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis