Browse Element(s) Details


Os.10261.1.S1_at

Description gb:AK101530.1
DB_XREF= gi:32986739
TID=Os.10261.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10261 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033047I05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033047I05, full insert sequence.
FL= gb:AK101530.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0549011/11tyrosyl-tRNA synthetase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g05450Os.35344.3.S1_x_at11/118+2888691..2896245transposon protein, putative, Mutator sub-class
LOC_Os08g05450OsAffx.22940.2.S1_s_at11/118+2888691..2896245transposon protein, putative, Mutator sub-class
LOC_Os08g05450Os.35344.18.S1_x_at10/118+2888691..2896245transposon protein, putative, Mutator sub-class
LOC_Os08g05450OsAffx.22940.1.S1_s_at10/118+2888691..2896245transposon protein, putative, Mutator sub-class
LOC_Os08g05450OsAffx.22940.5.S1_at10/118+2888691..2896245transposon protein, putative, Mutator sub-class
LOC_Os08g05450OsAffx.22940.3.S1_x_at9/118+2888691..2896245transposon protein, putative, Mutator sub-class
LOC_Os08g05450OsAffx.22940.5.S1_x_at9/118+2888691..2896245transposon protein, putative, Mutator sub-class
LOC_Os08g05450OsAffx.22940.2.S1_at8/118+2888691..2896245transposon protein, putative, Mutator sub-class
LOC_Os08g05450OsAffx.31552.2.S1_at1/118+2888691..2896245transposon protein, putative, Mutator sub-class
LOC_Os08g05460OsAffx.5716.1.S1_at11/118+2898272..2900951F-box domain containing protein
LOC_Os08g05470Os.50607.1.S1_at11/118+2903293..2906194expressed protein
LOC_Os08g05470OsAffx.29046.1.S1_at11/118+2903293..2906194expressed protein
LOC_Os08g05480Os.56230.1.S1_at11/118+2912328..2914937F-box domain containing protein, expressed
LOC_Os08g05490Os.10261.1.S1_at11/118+2917873..2922169tyrosyl-tRNA synthetase family protein, expressed
LOC_Os08g05500OsAffx.31174.4.S1_x_at9/118+2924894..2926622retrotransposon protein, putative, unclassified
LOC_Os08g05500OsAffx.31174.5.S1_x_at7/118+2924894..2926622retrotransposon protein, putative, unclassified
LOC_Os08g05510OsAffx.27508.78.S1_s_at11/118+2928448..2933764myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os08g05520Os.49830.1.S1_at11/118+2942209..2945028Myb-like DNA-binding domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006418biological_processtRNA aminoacylation for protein translation
GO:0004812molecular_functionaminoacyl-tRNA ligase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10261.1.S1_at--230--4551Chr08:2920604..2920628 (25 bp)
GCCCTCCCAACATTGTTGATGGCAA
LOC_Os08g05490
Os.10261.1.S1_at--550--8871Chr08:2920620..2920644 (25 bp)
TGATGGCAATCCATGCTTGGAGTAC
LOC_Os08g05490
Os.10261.1.S1_at--434--7831Chr08:2920708..2920898 (25 bp)
GGTAACAAGACATTTGCCAACATGA
LOC_Os08g05490
Os.10261.1.S1_at--973--6731Chr08:2920946..2920970 (25 bp)
GTTAAACCAGCTCTTGCAAAAGCGA
LOC_Os08g05490
Os.10261.1.S1_at--955--5131Chr08:2921193..2921217 (25 bp)
GCAAAAGTTCTGCTCAACACTGTTA
LOC_Os08g05490
Os.10261.1.S1_at--393--7951Chr08:2921868..2921892 (25 bp)
GGATACTAGTTCAAGCCCTCAAGCA
LOC_Os08g05490
Os.10261.1.S1_at--789--7471Chr08:2921953..2921977 (25 bp)
GTGTGATACACATTCTCTTTTGGTT
LOC_Os08g05490
Os.10261.1.S1_at--35--9631Chr08:2921999..2922023 (25 bp)
TCATGATCACCTTATACCGTTATAG
LOC_Os08g05490
Os.10261.1.S1_at--578--8151Chr08:2922061..2922085 (25 bp)
GGAAATGCCTTGTTGATACCAAACA
LOC_Os08g05490
Os.10261.1.S1_at--160--3291Chr08:2922080..2922104 (25 bp)
CAAACATTTGTTCTGCTCTGCATCT
LOC_Os08g05490
Os.10261.1.S1_at--916--10491Chr08:2922143..2922167 (25 bp)
TTAACTGGTGAAGCCCTGTTTGGAA
LOC_Os08g05490
Target Sequence 
GCCCTCCCAACATTGTTGATGGCAATCCATGCTTGGAGTACATCAAGTACATTGTTTTCCCTTGGTTTGAAACGTTTGAG
GTGGTTCGGAAGGAAGAAAATGGCGGTAACAAGACATTTGCCAACATGAATGAACTCATCGCTGATTATGAGAGTGGTGC
TTTGCATCCTGCTGATGTTAAACCAGCTCTTGCAAAAGCGATAAACCAAATATTGCAGCCTATCCGTGACCACTTCAAAA
ACAACAGTGAAGCAAAAGTTCTGCTCAACACTGTTAAGAATTACAAAGTAAAAACGGAGGATACTAGTTCAAGCCCTCAA
GCATCTTAAGAGTTCATGATGGTCTACATGGATATNCTTTTAACTNTGTTTACATTATGCAGTTGTGTGATACACATTCT
CTTTTGGTTAGTGTTATGTACTTTAAATGTTCATGATCACCTTATACCGTTATAGTATGAGAAAAAAGGCAAAAGTTTTG
AGTGCAGACAGTGGAAATGCCTTGTTGATACCAAACATTTGTTCTGCTCTGCATCTGCACANCCACTAAGGTCTTACCTT
TGTGGAAAGAAATATTAACTGGTGAAGCCCTGTTTGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10261.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis