Browse Element(s) Details


OsAffx.5716.1.S1_at

Description tigr:9636.m00475
TID=OsAffx.5716.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0546011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g05440OsAffx.10693.1.S1_at1/118+2872609..2884290NB-ARC domain containing protein
LOC_Os08g05450Os.35344.3.S1_x_at11/118+2888691..2896245transposon protein, putative, Mutator sub-class
LOC_Os08g05450OsAffx.22940.2.S1_s_at11/118+2888691..2896245transposon protein, putative, Mutator sub-class
LOC_Os08g05450Os.35344.18.S1_x_at10/118+2888691..2896245transposon protein, putative, Mutator sub-class
LOC_Os08g05450OsAffx.22940.1.S1_s_at10/118+2888691..2896245transposon protein, putative, Mutator sub-class
LOC_Os08g05450OsAffx.22940.5.S1_at10/118+2888691..2896245transposon protein, putative, Mutator sub-class
LOC_Os08g05450OsAffx.22940.3.S1_x_at9/118+2888691..2896245transposon protein, putative, Mutator sub-class
LOC_Os08g05450OsAffx.22940.5.S1_x_at9/118+2888691..2896245transposon protein, putative, Mutator sub-class
LOC_Os08g05450OsAffx.22940.2.S1_at8/118+2888691..2896245transposon protein, putative, Mutator sub-class
LOC_Os08g05450OsAffx.31552.2.S1_at1/118+2888691..2896245transposon protein, putative, Mutator sub-class
LOC_Os08g05460OsAffx.5716.1.S1_at11/118+2898272..2900951F-box domain containing protein
LOC_Os08g05470Os.50607.1.S1_at11/118+2903293..2906194expressed protein
LOC_Os08g05470OsAffx.29046.1.S1_at11/118+2903293..2906194expressed protein
LOC_Os08g05480Os.56230.1.S1_at11/118+2912328..2914937F-box domain containing protein, expressed
LOC_Os08g05490Os.10261.1.S1_at11/118+2917873..2922169tyrosyl-tRNA synthetase family protein, expressed
LOC_Os08g05500OsAffx.31174.4.S1_x_at9/118+2924894..2926622retrotransposon protein, putative, unclassified
LOC_Os08g05500OsAffx.31174.5.S1_x_at7/118+2924894..2926622retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5716.1.S1_at--657--4431Chr08:2898932..2898956 (25 bp)
GCCTTTTGAATGCATCGTCCGTGGA
LOC_Os08g05460
OsAffx.5716.1.S1_at--1055--5511Chr08:2898909..2898933 (25 bp)
GAAAAAGCTTACTTTCGCCTTGATG
LOC_Os08g05460
OsAffx.5716.1.S1_at--315--7791Chr08:2898654..2898678 (25 bp)
GGTGCCGGACATTCAACAGCCTAAA
LOC_Os08g05460
OsAffx.5716.1.S1_at--630--8051Chr08:2898598..2898622 (25 bp)
GGAGAGTTGCACACTTTGATCCACT
LOC_Os08g05460
OsAffx.5716.1.S1_at--176--10271Chr08:2898584..2898608 (25 bp)
TTTGATCCACTTGCTTCGATGCTCA
LOC_Os08g05460
OsAffx.5716.1.S1_at--662--4371Chr08:2898559..2898583 (25 bp)
CCAATCTTGGAGAAACTTACTCTGC
LOC_Os08g05460
OsAffx.5716.1.S1_at--761--10471Chr08:2898471..2898567 (25 bp)
TTACTCTGCATCTTGGAGTGATTGG
LOC_Os08g05460
OsAffx.5716.1.S1_at--986--8891Chr08:2898423..2898447 (25 bp)
TGAGTTACCCACAATCAGAGATGCC
LOC_Os08g05460
OsAffx.5716.1.S1_at--776--391Chr08:2898410..2898434 (25 bp)
ATCAGAGATGCCAGACATGTCGTTT
LOC_Os08g05460
OsAffx.5716.1.S1_at--280--1411Chr08:2898398..2898422 (25 bp)
AGACATGTCGTTTATTTGTGAGCAT
LOC_Os08g05460
OsAffx.5716.1.S1_at--981--3071Chr08:2898359..2898383 (25 bp)
AATCACCTGTGCGAACGACGACAAA
LOC_Os08g05460
Target Sequence 
GCCTTTTGAATGCATCGTCCGTGGAAAAAGCTTACTTTCGCCTTGATGATATGTCCTTCCCATGTTTTCATATGAAATAC
AACATCCTCAGTGCTTTGTCAAATGTTAAAAATCTGAAGTTGCTAATAGGACAATTCAATGATGATGCTTTTCAGTTAAT
GCAAAATGAGGTACTAAAAAGGGATCTCTGGAGGTGCCGGACATTCAACAGCCTAAAAAAACTGTCTGTCAGTGATTGGT
GTGTGGATGGAGAGTTGCACACTTTGATCCACTTGCTTCGATGCTCACCAATCTTGGAGAAACTTACTCTGCATCTTGGA
GTGATTGGAGGTTTGGCTTGGGAACAGTGGATGAGTTACCCACAATCAGAGATGCCAGACATGTCGTTTATTTGTGAGCA
TCTTAAGAAGGTCAAAATCACCTGTGCGAACGACGACAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5716.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis