Browse Element(s) Details


Os.56230.1.S1_at

Description gb:AK109659.1
DB_XREF= gi:32994868
TID=Os.56230.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56230 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-140-G02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-140-G02, full insert sequence.
FL= gb:AK109659.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0548011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g05450Os.35344.3.S1_x_at11/118+2888691..2896245transposon protein, putative, Mutator sub-class
LOC_Os08g05450OsAffx.22940.2.S1_s_at11/118+2888691..2896245transposon protein, putative, Mutator sub-class
LOC_Os08g05450Os.35344.18.S1_x_at10/118+2888691..2896245transposon protein, putative, Mutator sub-class
LOC_Os08g05450OsAffx.22940.1.S1_s_at10/118+2888691..2896245transposon protein, putative, Mutator sub-class
LOC_Os08g05450OsAffx.22940.5.S1_at10/118+2888691..2896245transposon protein, putative, Mutator sub-class
LOC_Os08g05450OsAffx.22940.3.S1_x_at9/118+2888691..2896245transposon protein, putative, Mutator sub-class
LOC_Os08g05450OsAffx.22940.5.S1_x_at9/118+2888691..2896245transposon protein, putative, Mutator sub-class
LOC_Os08g05450OsAffx.22940.2.S1_at8/118+2888691..2896245transposon protein, putative, Mutator sub-class
LOC_Os08g05450OsAffx.31552.2.S1_at1/118+2888691..2896245transposon protein, putative, Mutator sub-class
LOC_Os08g05460OsAffx.5716.1.S1_at11/118+2898272..2900951F-box domain containing protein
LOC_Os08g05470Os.50607.1.S1_at11/118+2903293..2906194expressed protein
LOC_Os08g05470OsAffx.29046.1.S1_at11/118+2903293..2906194expressed protein
LOC_Os08g05480Os.56230.1.S1_at11/118+2912328..2914937F-box domain containing protein, expressed
LOC_Os08g05490Os.10261.1.S1_at11/118+2917873..2922169tyrosyl-tRNA synthetase family protein, expressed
LOC_Os08g05500OsAffx.31174.4.S1_x_at9/118+2924894..2926622retrotransposon protein, putative, unclassified
LOC_Os08g05500OsAffx.31174.5.S1_x_at7/118+2924894..2926622retrotransposon protein, putative, unclassified
LOC_Os08g05510OsAffx.27508.78.S1_s_at11/118+2928448..2933764myb-like DNA-binding domain, SHAQKYF class family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56230.1.S1_at--993--1971Chr08:2914337..2914361 (25 bp)
ACTGCACGTGCCTGGACATCTACGG
LOC_Os08g05480
Os.56230.1.S1_at--111--5091Chr08:2914340..2914364 (25 bp)
GCACGTGCCTGGACATCTACGGGCG
LOC_Os08g05480
Os.56230.1.S1_at--877--1771Chr08:2914400..2914424 (25 bp)
ACGCGGCGTACCTGGTGTTCGGCAC
LOC_Os08g05480
Os.56230.1.S1_at--71--4671Chr08:2914448..2914472 (25 bp)
GCGGGCTGAGCTTCCCGGACCAGGA
LOC_Os08g05480
Os.56230.1.S1_at--97--6151Chr08:2914696..2914720 (25 bp)
GAGGTGCTCGGGTGGTATCCCAAGC
LOC_Os08g05480
Os.56230.1.S1_at--319--4291Chr08:2914725..2914749 (25 bp)
CCTCGTCGTCGAGTGCATGGAGTTT
LOC_Os08g05480
Os.56230.1.S1_at--526--2291Chr08:2914773..2914797 (25 bp)
AAATGAACGGTCGTGATCGCGCGGA
LOC_Os08g05480
Os.56230.1.S1_at--1159--8971Chr08:2914776..2914800 (25 bp)
TGAACGGTCGTGATCGCGCGGATTC
LOC_Os08g05480
Os.56230.1.S1_at--640--3951Chr08:2914794..2914818 (25 bp)
CGGATTCGCGGGTTGTATGACGTAT
LOC_Os08g05480
Os.56230.1.S1_at--374--6631Chr08:2914805..2914829 (25 bp)
GTTGTATGACGTATCGGACGGTCCA
LOC_Os08g05480
Os.56230.1.S1_at--987--10111Chr08:2914809..2914833 (25 bp)
TATGACGTATCGGACGGTCCAGATG
LOC_Os08g05480
Target Sequence 
ACTGCACGTGCCTGGACATCTACGGGCGGCTGCCGGCGGCGGCGCTGACACCGGCGACGCCGTACGCGGCGTACCTGGTG
TTCGGCACCGCGGCGGCGGCGGAGGGGCACCGCGGGCTGAGCTTCCCGGACCAGGAGACGACGGTGTCCGCGGCGGGGCG
CGTCGTGGCGCGCCACGCCGTGTGCCTCCGCCCCGACGACGCCGAGGCGCGCAAGTTCAGGGGCGTCGGCCTCGCCGACG
CCGGCGTCCCGGTCAGGCGCCCCGCGCGGCGCGGCGACGGGTGGTCGGAGATGGAGCTCGGCCGGGTGGCCGCCGACGAG
GTCGCCGGCGCCGGCGGCGAGGACGTGGTGGCGAGCTTCGAGGTGCTCGGGTGGTATCCCAAGCGCGGCCTCGTCGTCGA
GTGCATGGAGTTTAGGCCCGTAGTCTGAAGTTGGTAAAATGAACGGTCGTGATCGCGCGGATTCGCGGGTTGTATGACGT
ATCGGACGGTCCAGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56230.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis