Browse Element(s) Details


Os.50012.1.S1_at

Description gb:AK119626.1
DB_XREF= gi:37989249
TID=Os.50012.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.50012 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-115-B08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-117-H11, full insert sequence.
FL= gb:AK106744.1 gb:AK119626.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4033011/11auxin efflux carrier family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g40290Os.8667.1.S1_at11/115+23589542..23594088KH domain-containing protein, putative, expressed
LOC_Os05g40300NANA5+23602655..23602976expressed protein
LOC_Os05g40310OsAffx.4573.1.S1_at11/115+23605464..23607764expressed protein
LOC_Os05g40320Os.53940.1.S1_at11/115+23609733..23614179pentatricopeptide, putative, expressed
LOC_Os05g40320Os.53940.1.S2_at10/115+23609733..23614179pentatricopeptide, putative, expressed
LOC_Os05g40320OsAffx.14143.1.S1_at1/115+23609733..23614179pentatricopeptide, putative, expressed
LOC_Os05g40330Os.50012.1.S1_at11/115+23614535..23617464auxin efflux carrier family protein, putative, expressed
LOC_Os05g40340OsAffx.15037.1.S1_at10/115+23621899..23622617hypothetical protein
LOC_Os05g40350OsAffx.27257.1.S1_at11/115+23624347..23624876hypothetical protein
LOC_Os05g40360OsAffx.27258.1.S1_at11/115+23626304..23627186hypothetical protein
LOC_Os05g40370NANA5+23638300..23640886hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009926biological_processauxin polar transport
GO:0009672molecular_functionauxin:hydrogen symporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50012.1.S1_at--608--5191Chr05:23615362..23615517 (25 bp)
GCAATCTTGTTGACGGCCCTGGTGA
LOC_Os05g40330
Os.50012.1.S1_at--588--5851Chr05:23615313..23615337 (25 bp)
GACCACCGTCGCGATTATATTTGCA
LOC_Os05g40330
Os.50012.1.S1_at--415--211Chr05:23615295..23615319 (25 bp)
ATTTGCACGCTTGATATTGGTTCCA
LOC_Os05g40330
Os.50012.1.S1_at--140--71Chr05:23615270..23615294 (25 bp)
ATTGCTGGTATTGGCATCGTCTCAT
LOC_Os05g40330
Os.50012.1.S1_at--276--9731Chr05:23615203..23615227 (25 bp)
TCAAGTTCGTCCTGTTACTGCAGCA
LOC_Os05g40330
Os.50012.1.S1_at--353--611Chr05:23615175..23615198 (24 bp)
ATGCCCACATCGGTACTATCAGGTG
LOC_Os05g40330
Os.50012.1.S1_at--806--8211Chr05:23615018..23615042 (25 bp)
GGAATCAGCTGCAATCTTGTTCTGG
LOC_Os05g40330
Os.50012.1.S1_at--339--10851Chr05:23614689..23614713 (25 bp)
TTGGATCTGCGGGTTGCATTTTCCG
LOC_Os05g40330
Os.50012.1.S1_at--178--10671Chr05:23614669..23614693 (25 bp)
TTCCGGGCCGTGGACAATTGCGAGA
LOC_Os05g40330
Os.50012.1.S1_at--1074--1311Chr05:23614647..23614671 (25 bp)
AGAGGCCTGCTATTGTATGTTTTGT
LOC_Os05g40330
Os.50012.1.S1_at--590--3411Chr05:23614578..23614602 (25 bp)
CAGCACCTCTTGTACATTTGATCGT
LOC_Os05g40330
Target Sequence 
GCAATCTTGTTGACGGCCCTGGTGAAGGAAGTAGGAGACTTGGGGTTCGGACCACCGTCGCGATTATATTTGCACGCTTG
ATATTGGTTCCAATTGCTGGTATTGGCATCGTCTCATTTGCTGACAAGCTTGGATTTATTCCAAAAGGAGACAAGATGTT
CAAGTTCGTCCTGTTACTGCAGCACTCTATGCCCACATCGGTACTATCAGGTGCTGTTGCAAACCTAAGAGGTTGTGGCA
AGGAATCAGCTGCAATCTTGTTCTGGGTGCACATTTTTGCTGTCTTCTCCATGGCAGGATGGATTATCTTATATCTTACC
ATGCTGTTCTAGATACTAACTGCACTATGACATAATATGATATGTTCATGAAATACATGTTGCTGCAAAGTGCAAGGTGA
TTGGAAGTGCGACCCTGTTGGATCTGCGGGTTGCATTTTCCGGGCCGTGGACAATTGCGAGAGGCCTGCTATTGTATGTT
TTGTTTGGTTAGCTGCTGAAAACAATAGATGAGGCAAAGGAATTGTGTCAGCACCTCTTGTACATTTGATCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50012.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis