Browse Element(s) Details


OsAffx.14143.1.S1_at

Description tigr:9632.m03381
TID=OsAffx.14143.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=CorA-like Mg2+ transporter protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3516011/11CorA-like Mg2+ transporter protein, expressed
LOC_Os05g403201/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g35114Os.36212.1.S1_at10/114+21153387..21157199Protein kinase domain containing protein, expressed
LOC_Os04g35130Os.9065.1.S1_at11/114+21162406..21165881Harpin-induced protein 1 containing protein, expressed
LOC_Os04g35130OsAffx.26340.1.S1_x_at10/114+21162406..21165881Harpin-induced protein 1 containing protein, expressed
LOC_Os04g35140Os.54412.1.S1_at11/114+21171564..21174134Subtilisin N-terminal Region family protein, expressed
LOC_Os04g35150OsAffx.14142.1.S1_at11/114+21174989..21178008Thioredoxin family protein
LOC_Os04g35160OsAffx.14143.1.S1_at11/114+21181147..21184341CorA-like Mg2+ transporter protein, expressed
LOC_Os04g35160OsAffx.15607.1.S1_at1/114+21181147..21184341CorA-like Mg2+ transporter protein, expressed
LOC_Os04g35170Os.23819.1.S1_s_at11/114+21186131..21189779expressed protein
LOC_Os04g35180Os.54106.1.S1_at10/114+21189911..21192157co-chaperone GrpE family protein, expressed
LOC_Os04g35190Os.38242.1.S1_at11/114+21193582..21198485F-box domain containing protein, expressed
LOC_Os04g35200NANA4+21199819..21200915hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0030001biological_processmetal ion transport
GO:0016020cellular_componentmembrane
GO:0046873molecular_functionmetal ion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14143.1.S1_at--652--4111Chr04:21182841..21182865 (25 bp)
CGCAATATCTGGCAAAGTTCAAAAG
LOC_Os04g35160
OsAffx.14143.1.S1_at--149--9631Chr04:21183144..21183168 (25 bp)
TCAGGGATGAACTGGAACACTTGCT
LOC_Os04g35160
OsAffx.14143.1.S1_at--445--2111Chr04:21183183..21183207 (25 bp)
ACATGGCAGCATTGCACCTAACGGA
LOC_Os04g35160
OsAffx.14143.1.S1_at--757--10691Chr04:21183194..21183218 (25 bp)
TTGCACCTAACGGAGAAGCTCGCTT
LOC_Os04g35160
OsAffx.14143.1.S1_at--587--2692Chr05:23613780..23613819 (25 bp)
AAGCTCGCTTACCAGTCATCAAGAT
LOC_Os05g40320
OsAffx.14143.1.S1_at--802--1631Chr04:21183254..21183386 (25 bp)
AGCGAGCTCGAAGATCACAGCAGCA
LOC_Os04g35160
OsAffx.14143.1.S1_at--716--5351Chr04:21183263..21183398 (25 bp)
GAAGATCACAGCAGCAGGGATGAAG
LOC_Os04g35160
OsAffx.14143.1.S1_at--459--8551Chr04:21183483..21183507 (25 bp)
TGGAGATCCTGCTGGAGTCCTACTT
LOC_Os04g35160
OsAffx.14143.1.S1_at--610--9131Chr04:21183492..21183516 (25 bp)
TGCTGGAGTCCTACTTCGTGCAGAT
LOC_Os04g35160
OsAffx.14143.1.S1_at--1054--1831Chr04:21184156..21184180 (25 bp)
ACGCTGGTGTCCAGCTGCGCCATCG
LOC_Os04g35160
OsAffx.14143.1.S1_at--563--7691Chr04:21184190..21184214 (25 bp)
GGGTCTTCGGCATCAACGTCCACAT
LOC_Os04g35160
Target Sequence 
CGCAATATCTGGCAAAGTTCAAAAGGTCAGGGATGAACTGGAACACTTGCTGGATGACGACATGGACATGGCAGCATTGC
ACCTAACGGAGAAGCTCGCTTACCAGTCATCAAGATTCGACATCGATAAAGAAGCAAGCGAGCTCGAAGATCACAGCAGC
AGGGATGAAGAAGGAGTCGAGGGAGGCGGCGGCGGCGACGGCGACGACGAGACGATCGCCGGCGGCGGCAGCTTCAGCCC
CAACACCGACGAGCTGGAGATCCTGCTGGAGTCCTACTTCGTGCAGATCGATGGCACCCTCAACAGCCTCTCCACCCTGA
GGGAGTACGTGGAGGACACGGAGGACTACATCAACATGATGCTGGACGAGAAGCAGAACCAGCTGCTGCAGATGGGGATC
CTGCTGTCGACGGGGACGCTGGTGTCCAGCTGCGCCATCGCCGTCACGGGGGTCTTCGGCATCAACGTCCACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14143.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis