Browse Element(s) Details


Os.38242.1.S1_at

Description gb:AK064823.1
DB_XREF= gi:32974841
TID=Os.38242.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.38242 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013000F02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000F02, full insert sequence.
FL= gb:AK064823.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3519011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g35140Os.54412.1.S1_at11/114+21171564..21174134Subtilisin N-terminal Region family protein, expressed
LOC_Os04g35150OsAffx.14142.1.S1_at11/114+21174989..21178008Thioredoxin family protein
LOC_Os04g35160OsAffx.14143.1.S1_at11/114+21181147..21184341CorA-like Mg2+ transporter protein, expressed
LOC_Os04g35160OsAffx.15607.1.S1_at1/114+21181147..21184341CorA-like Mg2+ transporter protein, expressed
LOC_Os04g35170Os.23819.1.S1_s_at11/114+21186131..21189779expressed protein
LOC_Os04g35180Os.54106.1.S1_at10/114+21189911..21192157co-chaperone GrpE family protein, expressed
LOC_Os04g35190Os.38242.1.S1_at11/114+21193582..21198485F-box domain containing protein, expressed
LOC_Os04g35200NANA4+21199819..21200915hypothetical protein
LOC_Os04g35210OsAffx.14145.1.S1_at10/114+21211096..21214650Leucine Rich Repeat family protein, expressed
LOC_Os04g35220Os.48068.1.S1_at11/114+21215084..21218002Transcription termination factor nusG family protein, expressed
LOC_Os04g35220Os.48068.1.S1_x_at11/114+21215084..21218002Transcription termination factor nusG family protein, expressed
LOC_Os04g35230OsAffx.14146.1.S1_at11/114+21221128..21224489hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38242.1.S1_at--93--2171Chr04:21197436..21197459 (24 bp)
ACACTAGTTAGGATGCGCCTCAGGC
LOC_Os04g35190
Os.38242.1.S1_at--433--2531Chr04:21197559..21197583 (25 bp)
AACTCTGGGCGCAAACAACAGGTTG
LOC_Os04g35190
Os.38242.1.S1_at--716--2931Chr04:21197639..21197663 (25 bp)
AAGGCAGCGTGCTTGAACTTGTGGA
LOC_Os04g35190
Os.38242.1.S1_at--95--8911Chr04:21197679..21197703 (25 bp)
TGAGACGCATGATCCAGAAGTTCCT
LOC_Os04g35190
Os.38242.1.S1_at--69--3371Chr04:21197693..21197717 (25 bp)
CAGAAGTTCCTGCTGTTACCCACAG
LOC_Os04g35190
Os.38242.1.S1_at--988--6231Chr04:21197949..21197973 (25 bp)
GATGGACTACTTTGTCCCTGGGTGA
LOC_Os04g35190
Os.38242.1.S1_at--907--4191Chr04:21197964..21197988 (25 bp)
CCCTGGGTGATCTTGCGCACAAATA
LOC_Os04g35190
Os.38242.1.S1_at--996--5191Chr04:21198018..21198042 (25 bp)
GCAATTTCGCTGATGTTAGGGCAAT
LOC_Os04g35190
Os.38242.1.S1_at--221--8691Chr04:21198045..21198069 (25 bp)
TGTGCATACACCATCAGACGTCAGT
LOC_Os04g35190
Os.38242.1.S1_at--604--1391Chr04:21198060..21198084 (25 bp)
AGACGTCAGTCTTTGTTCAATTTCA
LOC_Os04g35190
Os.38242.1.S1_at--1074--3491Chr04:21198201..21198225 (25 bp)
CATGGTGTTGCCTTGTAAATAGATC
LOC_Os04g35190
Target Sequence 
ACACTAGTTAGGATGCGCCTCAGGCTNAGAGGCACAACTCTGGGCGCAAACAACAGGTTGGATGTATTGAAGATCTTAAC
CACCGGGGTGAATGCAACCGAACTGAGAAACTGGAAAGGCAGCGTGCTTGAACTTGTGGAGACCTGGGATGAGGATGAGA
CGCATGATCCAGAAGTTCCTGCTGTTACCCACAGCAGGGGTTTGACCCCATTTGTGTTNGTTCCATTTGAGGAGGCTGAT
ACTTCAGTGATGAATCTGCCAGTGGAGAAGATGGACTACTTTGTCCCTGGGTGATCTTGCGCACAAATAATAGTTTTTCC
AAGATATATGATGAAGACGCAATTTCGCTGATGTTAGGGCAATAATGTGCATACACCATCAGACGTCAGTCTTTGTTCAA
TTTCATGCTCATGTTGCTTGTATACTGTTGTATGAATAATGCTATGTTTTGTTGGTGCTTGAAAGCAAACATTTTGTTGG
ACCATCCTCCCGCAGCANNAATNNTCCAATACTTACTANTACATGGTGTTGCCTTGTAAATAGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38242.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis