Browse Element(s) Details


Os.48068.1.S1_x_at

Description gb:AK068094.1
DB_XREF= gi:32978112
TID=Os.48068.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.48068 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013132B21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013132B21, full insert sequence.
FL= gb:AK068094.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3522011/11Transcription termination factor nusG family protein, expressed
LOC_Os02g292203/11Transcription termination factor nusG family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g35180Os.54106.1.S1_at10/114+21189911..21192157co-chaperone GrpE family protein, expressed
LOC_Os04g35190Os.38242.1.S1_at11/114+21193582..21198485F-box domain containing protein, expressed
LOC_Os04g35200NANA4+21199819..21200915hypothetical protein
LOC_Os04g35210OsAffx.14145.1.S1_at10/114+21211096..21214650Leucine Rich Repeat family protein, expressed
LOC_Os04g35220Os.48068.1.S1_at11/114+21215084..21218002Transcription termination factor nusG family protein, expressed
LOC_Os04g35220Os.48068.1.S1_x_at11/114+21215084..21218002Transcription termination factor nusG family protein, expressed
LOC_Os04g35230OsAffx.14146.1.S1_at11/114+21221128..21224489hypothetical protein
LOC_Os04g35240Os.10746.1.S1_a_at11/114+21227131..21232574Serine/threonine-protein kinase SAPK7, putative, expressed
LOC_Os04g35250OsAffx.14147.1.S1_at11/114+21236828..21238342GRAS family transcription factor containing protein
LOC_Os04g35260OsAffx.14148.2.S1_s_at11/114+21241121..21258041helicase domain-containing protein, putative, expressed
LOC_Os04g35260OsAffx.14148.1.S1_at11/114+21241121..21258041helicase domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48068.1.S1_x_at--1041--5912Chr02:17335485..17335509 (25 bp)
GAGCTTCGGAAGCAGCCAGAACAAA
LOC_Os02g29220
Os.48068.1.S1_x_at--784--7891Chr04:21215984..21216008 (25 bp)
GGTTCAGCAGATGCAAGCCCTCAAT
LOC_Os04g35220
Os.48068.1.S1_x_at--958--1652Chr02:17335550..17335574 (25 bp)
AGCCCTCAATCAGCAGCTTGAAGAA
LOC_Os02g29220
Os.48068.1.S1_x_at--1139--5371Chr04:21215577..21215974 (25 bp)
GAAGAAGCTGAAACCGCCATAGATG
LOC_Os04g35220
Os.48068.1.S1_x_at--212--871Chr04:21215411..21215435 (25 bp)
AGGCCACCGCCATAGAGTCTAAAGA
LOC_Os04g35220
Os.48068.1.S1_x_at--519--5611Chr04:21215367..21215391 (25 bp)
GACAAGATTGCTGAAGGCCCTCCAA
LOC_Os04g35220
Os.48068.1.S1_x_at--289--1171Chr04:21215323..21215347 (25 bp)
AGTACTGGTCATTGTTAGTCTTTTT
LOC_Os04g35220
Os.48068.1.S1_x_at--103--2231Chr04:21215289..21215313 (25 bp)
ACAAGTATTATATGCCAGTGGATTC
LOC_Os04g35220
Os.48068.1.S1_x_at--718--6572Chr02:17336269..17336763 (25 bp)
GATTCTTTACATAGGCTTTGCTGGG
NONE
Os.48068.1.S1_x_at--490--5652Chr02:17336322..17336346 (25 bp)
GACAGTTGCCATTTTTTGTCACTAA
LOC_Os02g29220
Os.48068.1.S1_x_at--444--8251Chr04:21215163..21215187 (25 bp)
GGCAGAGCTGACTAGTGTGGTTTAC
LOC_Os04g35220
Target Sequence 
GAGCTTCGGAAGCAGCCAGAACAAATTATTCTATCAGAAGTTCGTCAAATGGTTCAGCAGATGCAAGCCCTCAATCAGCA
GCTTGAAGAAGCTGAAACCGCCATAGATGAATATTTCAAACCAATCGATAAGAATGCTAAGATCATAATGGACATGCAAC
TGGAGAAAGAAGAGAAGCAAATAAAGGAGATGACGAAAGTAATGCAAGATCAAATAGCAATGCAAAGAGAAATCGCAAGT
AAGAGAGCTCAGGCCACCGCCATAGAGTCTAAAGACGCCCAAACGCAAACAAGTGACAAGATTGCTGAAGGCCCTCCAAA
AGAAGAAACCATGAAATAAGTACTGGTCATTGTTAGTCTTTTTTTTTTTGTAAACAAGTATTATATGCCAGTGGATTCTT
TACATAGGCTTTGCTGGGCTANGCAATAATAAGTATGGATGGATGCNTGGGAAGACAGTTGCCATTTTTTGTCACTAANA
AGAGGNTATCATNTTCTCTGGCAGAGCTGACTAGTGTGGTTTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48068.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis