Browse Element(s) Details


OsAffx.14147.1.S1_at

Description tigr:9632.m03390
TID=OsAffx.14147.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AJ303345 lateral suppressor
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3525011/11GRAS family transcription factor containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g35210OsAffx.14145.1.S1_at10/114+21211096..21214650Leucine Rich Repeat family protein, expressed
LOC_Os04g35220Os.48068.1.S1_at11/114+21215084..21218002Transcription termination factor nusG family protein, expressed
LOC_Os04g35220Os.48068.1.S1_x_at11/114+21215084..21218002Transcription termination factor nusG family protein, expressed
LOC_Os04g35230OsAffx.14146.1.S1_at11/114+21221128..21224489hypothetical protein
LOC_Os04g35240Os.10746.1.S1_a_at11/114+21227131..21232574Serine/threonine-protein kinase SAPK7, putative, expressed
LOC_Os04g35250OsAffx.14147.1.S1_at11/114+21236828..21238342GRAS family transcription factor containing protein
LOC_Os04g35260OsAffx.14148.2.S1_s_at11/114+21241121..21258041helicase domain-containing protein, putative, expressed
LOC_Os04g35260OsAffx.14148.1.S1_at11/114+21241121..21258041helicase domain-containing protein, putative, expressed
LOC_Os04g35270OsAffx.14149.1.S1_at11/114+21260515..21262074Alpha4-fucosyltransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14147.1.S1_at--769--7751Chr04:21237398..21237422 (25 bp)
GGTGTTCCCGGCGAGCTCAAGAGAA
LOC_Os04g35250
OsAffx.14147.1.S1_at--406--10651Chr04:21237394..21237418 (25 bp)
TTCCCGGCGAGCTCAAGAGAAGCGT
LOC_Os04g35250
OsAffx.14147.1.S1_at--714--1631Chr04:21237374..21237398 (25 bp)
AGCGTGCGCCGCCACAAGAATGGCT
LOC_Os04g35250
OsAffx.14147.1.S1_at--851--2731Chr04:21237359..21237383 (25 bp)
AAGAATGGCTTACATCAACTCCCTG
LOC_Os04g35250
OsAffx.14147.1.S1_at--1144--2951Chr04:21237356..21237380 (25 bp)
AATGGCTTACATCAACTCCCTGAAC
LOC_Os04g35250
OsAffx.14147.1.S1_at--831--10551Chr04:21237319..21237343 (25 bp)
TTCTTGATCGAGAAACACGACGGCG
LOC_Os04g35250
OsAffx.14147.1.S1_at--674--1711Chr04:21237268..21237292 (25 bp)
ACCACTACAGGAAGAAGCGCGAGCT
LOC_Os04g35250
OsAffx.14147.1.S1_at--491--4331Chr04:21237150..21237174 (25 bp)
CCATCGAGAGGGACCACCTCGGGAG
LOC_Os04g35250
OsAffx.14147.1.S1_at--765--3351Chr04:21237049..21237073 (25 bp)
CACGCAGCAGCTAGCTGGAACTGGA
LOC_Os04g35250
OsAffx.14147.1.S1_at--618--7351Chr04:21236868..21236892 (25 bp)
GTGACATGGCTCTGGCTACGGCGAC
LOC_Os04g35250
OsAffx.14147.1.S1_at--885--851Chr04:21236863..21236887 (25 bp)
ATGGCTCTGGCTACGGCGACCTTGT
LOC_Os04g35250
Target Sequence 
GGTGTTCCCGGCGAGCTCAAGAGAAGCGTGCGCCGCCACAAGAATGGCTTACATCAACTCCCTGAACCCGTCCATGGTGT
TCTTGATCGAGAAACACGACGGCGGCGGCGGGCTCACCGGCGGCGACAACACCACTACAGGAAGAAGCGCGAGCTTGCTC
CCGCGGTTCGCCGCCAACCTCCGATACTTCGCCGCCGTGTTCGACTCGCTCCACGAGTGCCTCCCGGCGGACAGCGCCGA
GAGGCTCGCCATCGAGAGGGACCACCTCGGGAGGGAGATCGCCGACGCCGTGGCCTCGCTAGACCACCAACACCGCCGCC
GCCATGGCGGCGGCGGCGGCGGCGGCGATCACGCAGCAGCTAGCTGGAACTGGAAGGCGGCCATGGAGGGCGCCGGGCTC
GACGGCGTGAAGCTGAGCTCGAGGACGGTGAGCCAGGCGAAGCTGCTGCTCAAGATGAAGAGCGGCTGCGGCGGCGGCGG
GTTCCGCGTCGTGGAGGGCGACGGCGGCATGGCCATGTCGCTGGCGTGGCGTGACATGGCTCTGGCTACGGCGACCTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14147.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis