Browse Element(s) Details


OsAffx.14149.1.S1_at

Description tigr:9632.m03393
TID=OsAffx.14149.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=alpha-1,4-fucosyltransferase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3527011/11Alpha4-fucosyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g35250OsAffx.14147.1.S1_at11/114+21236828..21238342GRAS family transcription factor containing protein
LOC_Os04g35260OsAffx.14148.2.S1_s_at11/114+21241121..21258041helicase domain-containing protein, putative, expressed
LOC_Os04g35260OsAffx.14148.1.S1_at11/114+21241121..21258041helicase domain-containing protein, putative, expressed
LOC_Os04g35270OsAffx.14149.1.S1_at11/114+21260515..21262074Alpha4-fucosyltransferase, putative, expressed
LOC_Os04g35280Os.17484.1.S1_at11/114+21264182..21268657Neutral/alkaline invertase, putative, expressed
LOC_Os04g35290Os.9630.1.S1_at11/114+21274652..21277659Thioredoxin family protein, expressed
LOC_Os04g35300Os.9083.1.S1_at10/114+21279120..21281231expressed protein
LOC_Os04g35310OsAffx.14150.1.S1_at11/114+21285733..21287045BTB/POZ domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0008417molecular_functionfucosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0017083molecular_function4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14149.1.S1_at--989--7291Chr04:21261519..21261543 (25 bp)
GTGCTTCGAGCACCGGAACAAGATC
LOC_Os04g35270
OsAffx.14149.1.S1_at--1062--1491Chr04:21261527..21261551 (25 bp)
AGCACCGGAACAAGATCGCGCGGGA
LOC_Os04g35270
OsAffx.14149.1.S1_at--367--10611Chr04:21261580..21261604 (25 bp)
TTCGGCCGGTGCGAGAACAACGTCG
LOC_Os04g35270
OsAffx.14149.1.S1_at--251--4691Chr04:21261664..21261688 (25 bp)
GCGGAGTGGTGGGACCACCTCCACT
LOC_Os04g35270
OsAffx.14149.1.S1_at--817--4551Chr04:21261689..21261713 (25 bp)
GCGCCATGTCGCACTACAAGTTCGT
LOC_Os04g35270
OsAffx.14149.1.S1_at--1112--531Chr04:21261733..21261757 (25 bp)
ATCGCCGACAGCTACTCCACGGAGA
LOC_Os04g35270
OsAffx.14149.1.S1_at--870--9911Chr04:21261745..21261769 (25 bp)
TACTCCACGGAGAAGCTCTACTACG
LOC_Os04g35270
OsAffx.14149.1.S1_at--513--1451Chr04:21261755..21261779 (25 bp)
AGAAGCTCTACTACGCGCTGGAGGC
LOC_Os04g35270
OsAffx.14149.1.S1_at--669--6211Chr04:21261775..21261799 (25 bp)
GAGGCCGGGTCGGTGCCCATCTACT
LOC_Os04g35270
OsAffx.14149.1.S1_at--906--7691Chr04:21261781..21261805 (25 bp)
GGGTCGGTGCCCATCTACTTCGGCG
LOC_Os04g35270
OsAffx.14149.1.S1_at--1060--8271Chr04:21261961..21261985 (25 bp)
GGCTACGGCCGGAACCGGCTCGTCA
LOC_Os04g35270
Target Sequence 
GTGCTTCGAGCACCGGAACAAGATCGCGCGGGAGCTGTTCCGCCACCTCCCGGCGCACTCCTTCGGCCGGTGCGAGAACA
ACGTCGGCGGCGGCGACAAGGCCCTGGAGCTGTACCCGGACTGCGCCCGCGACGGCCACGGCGCGGCGGAGTGGTGGGAC
CACCTCCACTGCGCCATGTCGCACTACAAGTTCGTGCTCGCCATCGAGAACACCATCGCCGACAGCTACTCCACGGAGAA
GCTCTACTACGCGCTGGAGGCCGGGTCGGTGCCCATCTACTTCGGCGCGCCCAACGCCCGCGACCTGGCGCCCCCGGGCT
CCTACATCGACGGCGCCGCGTTCGCGTCGGCGGAGGAGCTCGCGGCGTACGTGAGGGAGGTGGCCGGCGACCCGGCGGCG
TACGCCGAGTTCCACGCGTGGCGGCGGTGCGGCGTCCTGGGCGGCTACGGCCGGAACCGGCTCGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14149.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis