Browse Element(s) Details


OsAffx.14148.2.S1_s_at

Description tigr:9632.m03392
TID=OsAffx.14148.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Helicase associated domain (HA2), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3526011/11helicase domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g35220Os.48068.1.S1_at11/114+21215084..21218002Transcription termination factor nusG family protein, expressed
LOC_Os04g35220Os.48068.1.S1_x_at11/114+21215084..21218002Transcription termination factor nusG family protein, expressed
LOC_Os04g35230OsAffx.14146.1.S1_at11/114+21221128..21224489hypothetical protein
LOC_Os04g35240Os.10746.1.S1_a_at11/114+21227131..21232574Serine/threonine-protein kinase SAPK7, putative, expressed
LOC_Os04g35250OsAffx.14147.1.S1_at11/114+21236828..21238342GRAS family transcription factor containing protein
LOC_Os04g35260OsAffx.14148.2.S1_s_at11/114+21241121..21258041helicase domain-containing protein, putative, expressed
LOC_Os04g35260OsAffx.14148.1.S1_at11/114+21241121..21258041helicase domain-containing protein, putative, expressed
LOC_Os04g35270OsAffx.14149.1.S1_at11/114+21260515..21262074Alpha4-fucosyltransferase, putative, expressed
LOC_Os04g35280Os.17484.1.S1_at11/114+21264182..21268657Neutral/alkaline invertase, putative, expressed
LOC_Os04g35290Os.9630.1.S1_at11/114+21274652..21277659Thioredoxin family protein, expressed
LOC_Os04g35300Os.9083.1.S1_at10/114+21279120..21281231expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0004386molecular_functionhelicase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14148.2.S1_s_at--872--4071Chr04:21243509..21243533 (25 bp)
CGACGAGAAGTTCACATACACCCAT
LOC_Os04g35260
OsAffx.14148.2.S1_s_at--514--2031Chr04:21243215..21243239 (25 bp)
ACTAGTGTTATTTCTCCTTACTCGC
LOC_Os04g35260
OsAffx.14148.2.S1_s_at--740--9911Chr04:21243197..21243221 (25 bp)
TACTCGCTCCTTCTGTTTGGTGGTA
LOC_Os04g35260
OsAffx.14148.2.S1_s_at--768--7731Chr04:21243179..21243203 (25 bp)
GGTGGTACCATGGTTATCCAACATC
LOC_Os04g35260
OsAffx.14148.2.S1_s_at--347--2951Chr04:21242716..21242740 (25 bp)
AAGGCTGGCAGCTGCTGCACAGACT
LOC_Os04g35260
OsAffx.14148.2.S1_s_at--375--9031Chr04:21242701..21242725 (25 bp)
TGCACAGACTGCTGTCCTATTCAAG
LOC_Os04g35260
OsAffx.14148.2.S1_s_at--151--8711Chr04:21242689..21242713 (25 bp)
TGTCCTATTCAAGCAACTTCGCGTA
LOC_Os04g35260
OsAffx.14148.2.S1_s_at--701--2511Chr04:21242675..21242699 (25 bp)
AACTTCGCGTAACACTTGATGCTGT
LOC_Os04g35260
OsAffx.14148.2.S1_s_at--887--8591Chr04:21242341..21242365 (25 bp)
TGGTCAGATCCATTATTCATTTACT
LOC_Os04g35260
OsAffx.14148.2.S1_s_at--239--6471Chr04:21242210..21242234 (25 bp)
GATACAGTAGTCACAACTTGGCTAT
LOC_Os04g35260
OsAffx.14148.2.S1_s_at--560--1211Chr04:21242145..21242169 (25 bp)
AGTTTTGCATGGAACTCCTGCCATA
LOC_Os04g35260
Target Sequence 
CGACGAGAAGTTCACATACACCCATCATCTATGAACCACAGCTTGAAAGCTGGTCAATATCCATTTTTGGTGTTTCTTGA
GAAGGTTGAGACAAGTAAGGTATTTCTACGTGATACTAGTGTTATTTCTCCTTACTCGCTCCTTCTGTTTGGTGGTACCA
TGGTTATCCAACATCAGACAGGAGTGGTTATCATAGATGGATGGTTAAGGCTGGCAGCTGCTGCACAGACTGCTGTCCTA
TTCAAGCAACTTCGCGTAACACTTGATGCTGTTCTGAAAGAATTGATAAGAAAGCCAGAGATGGCAACTTTTGTTGACAA
TGAAGTGGTCAGATCCATTATTCATTTACTGTTAGAAGAAGAAAAGGCCCAACAAGCATGAAATTATGGTAATCTCTTCA
TATTAAGTTTTTTCTTGTAACGTAACTGAAAGATCAGTGTCAAATATTATCTCACAGATACAGTAGTCACAACTTGGCTA
TTTGTGGAGCATTAGAATTTGCATGGAAATTAGTTTCTTCGAGTTTTGCATGGAACTCCTGCCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14148.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis