Browse Element(s) Details


OsAffx.14146.1.S1_at

Description tigr:9632.m03388
TID=OsAffx.14146.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3523011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g35190Os.38242.1.S1_at11/114+21193582..21198485F-box domain containing protein, expressed
LOC_Os04g35200NANA4+21199819..21200915hypothetical protein
LOC_Os04g35210OsAffx.14145.1.S1_at10/114+21211096..21214650Leucine Rich Repeat family protein, expressed
LOC_Os04g35220Os.48068.1.S1_at11/114+21215084..21218002Transcription termination factor nusG family protein, expressed
LOC_Os04g35220Os.48068.1.S1_x_at11/114+21215084..21218002Transcription termination factor nusG family protein, expressed
LOC_Os04g35230OsAffx.14146.1.S1_at11/114+21221128..21224489hypothetical protein
LOC_Os04g35240Os.10746.1.S1_a_at11/114+21227131..21232574Serine/threonine-protein kinase SAPK7, putative, expressed
LOC_Os04g35250OsAffx.14147.1.S1_at11/114+21236828..21238342GRAS family transcription factor containing protein
LOC_Os04g35260OsAffx.14148.2.S1_s_at11/114+21241121..21258041helicase domain-containing protein, putative, expressed
LOC_Os04g35260OsAffx.14148.1.S1_at11/114+21241121..21258041helicase domain-containing protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14146.1.S1_at--605--4291Chr04:21221158..21221182 (25 bp)
CCTCGTGGTTGTGCGCCATCGTTAT
LOC_Os04g35230
OsAffx.14146.1.S1_at--691--6631Chr04:21221165..21221189 (25 bp)
GTTGTGCGCCATCGTTATCTGCGGC
LOC_Os04g35230
OsAffx.14146.1.S1_at--428--6791Chr04:21221178..21221202 (25 bp)
GTTATCTGCGGCCTTCTCGAGTCGC
LOC_Os04g35230
OsAffx.14146.1.S1_at--564--531Chr04:21221212..21221236 (25 bp)
ATCCTCCTACCATGGTCAGCTAAAG
LOC_Os04g35230
OsAffx.14146.1.S1_at--434--9231Chr04:21221216..21221240 (25 bp)
TCCTACCATGGTCAGCTAAAGAAGC
LOC_Os04g35230
OsAffx.14146.1.S1_at--834--3731Chr04:21221231..21221255 (25 bp)
CTAAAGAAGCTGAGGTGACCGGCAA
LOC_Os04g35230
OsAffx.14146.1.S1_at--598--8911Chr04:21221246..21221266 (21 bp)
TGACCGGCAAGGAGCGGCACGAAAT
LOC_Os04g35230
OsAffx.14146.1.S1_at--771--4091Chr04:21223984..21224007 (24 bp)
CGAAATATTTGTGCGGGTGAAGGAA
LOC_Os04g35230
OsAffx.14146.1.S1_at--573--5211Chr04:21224009..21224033 (25 bp)
GAATATCGGCCTATACAGAAGGATT
LOC_Os04g35230
OsAffx.14146.1.S1_at--377--2151Chr04:21224023..21224047 (25 bp)
ACAGAAGGATTCTTGAGGTTCATAA
LOC_Os04g35230
OsAffx.14146.1.S1_at--44--6034Chr04:21224422..21224446 (25 bp)
GAGATAGCCTTATCGGCGAGGTCAA
LOC_Os04g35230
Target Sequence 
CCTCGTGGTTGTGCGCCATCGTTATCTGCGGCCTTCTCGAGTCGCCACCTTCGCATCCTCCTACCATGGTCAGCTAAAGA
AGCTGAGGTGACCGGCAAGGAGCGGCACGAAATATTTGTGCGGGTGAAGGAAAGAATATCGGCCTATACAGAAGGATTCT
TGAGGTTCATAAGAGATAGCCTTATCGGCGAGGTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14146.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis