Browse Element(s) Details


Os.10746.1.S1_a_at

Description gb:AB125308.1
DB_XREF= gi:46917341
GEN=SAPK7
TID=Os.10746.1
CNT=14
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.10746 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) SAPK7 mRNA for serinethreonine protein kinase SAPK7, complete cds.
PROD=serinethreonine protein kinase SAPK7
FL= gb:AB125308.1 gb:AK122087.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3524011/11Serine/threonine-protein kinase SAPK7, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g35210OsAffx.14145.1.S1_at10/114+21211096..21214650Leucine Rich Repeat family protein, expressed
LOC_Os04g35220Os.48068.1.S1_at11/114+21215084..21218002Transcription termination factor nusG family protein, expressed
LOC_Os04g35220Os.48068.1.S1_x_at11/114+21215084..21218002Transcription termination factor nusG family protein, expressed
LOC_Os04g35230OsAffx.14146.1.S1_at11/114+21221128..21224489hypothetical protein
LOC_Os04g35240Os.10746.1.S1_a_at11/114+21227131..21232574Serine/threonine-protein kinase SAPK7, putative, expressed
LOC_Os04g35250OsAffx.14147.1.S1_at11/114+21236828..21238342GRAS family transcription factor containing protein
LOC_Os04g35260OsAffx.14148.2.S1_s_at11/114+21241121..21258041helicase domain-containing protein, putative, expressed
LOC_Os04g35260OsAffx.14148.1.S1_at11/114+21241121..21258041helicase domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10746.1.S1_a_at--244--331Chr04:21231984..21232008 (25 bp)
ATAAGGGAGATCAGGAACCACCCAT
LOC_Os04g35240
Os.10746.1.S1_a_at--1033--5371Chr04:21232016..21232040 (25 bp)
GAAGAACCTGCCAAGAGAGCTCACA
LOC_Os04g35240
Os.10746.1.S1_a_at--402--1471Chr04:21232066..21232090 (25 bp)
AGAAGGATAACAGTGCCCCGACCTA
LOC_Os04g35240
Os.10746.1.S1_a_at--292--9891Chr04:21232089..21232113 (25 bp)
TACTCCGTCCAGTCGGTCGAGGAGA
LOC_Os04g35240
Os.10746.1.S1_a_at--1082--1571Chr04:21232303..21232327 (25 bp)
AGCTCAGCTGAGTATTTCTGTCCAG
LOC_Os04g35240
Os.10746.1.S1_a_at--160--6891Chr04:21232314..21232338 (25 bp)
GTATTTCTGTCCAGCAGCACAGGAA
LOC_Os04g35240
Os.10746.1.S1_a_at--1118--8251Chr04:21232369..21232393 (25 bp)
GGCAGCTGATGGTCACACTCCCATT
LOC_Os04g35240
Os.10746.1.S1_a_at--279--9691Chr04:21232381..21232405 (25 bp)
TCACACTCCCATTCTGTAGTTTGCA
LOC_Os04g35240
Os.10746.1.S1_a_at--1138--6931Chr04:21232396..21232420 (25 bp)
GTAGTTTGCAGTCTTGTTTTTCTTT
LOC_Os04g35240
Os.10746.1.S1_a_at--773--3671Chr04:21232438..21232462 (25 bp)
CTTTTCTTCTCTTTGATGCTGCAAC
LOC_Os04g35240
Os.10746.1.S1_a_at--758--8571Chr04:21232480..21232504 (25 bp)
TGGTTCTGTCACTGTCTTTGTAATG
LOC_Os04g35240
Target Sequence 
ATAAGGGAGATCAGGAACCACCCATGGTTCCTGAAGAACCTGCCAAGAGAGCTCACAGAAGCTGCACAGGCAATGTACTA
CAAGAAGGATAACAGTGCCCCGACCTACTCCGTCCAGTCGGTCGAGGAGATCATGAAGATTGTCGAGGAAGCGCGGACGC
CGCCTCGGTCCTCCACCCCCGTGGCCGGCTTTGGCTGGCAAGAGGAGGATGAGCAGGAGGACAACAGCAAGAAGCCAGAG
GAAGAACAGGAGGAAGAGGAAGATGCTGAGGATGAGTACGACAAGCAGGTGAAACAAGTCCATGCCAGTGGTGAGTTTCA
GCTCAGCTGAGTATTTCTGTCCAGCAGCACAGGAAGATTGCAAACTGGAGATATTGTCATAATGTGGCAGCTGATGGTCA
CACTCCCATTCTGTAGTTTGCAGTCTTGTTTTTCTTTTTTCAGTTTCATTTTTTCTTTTCTTCTCTTTGATGCTGCAACA
GTGTAAATTACCAAAGTGGTTCTGTCACTGTCTTTGTAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10746.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis