Browse Element(s) Details


Os.54106.1.S1_at

Description gb:AK101973.1
DB_XREF= gi:32987182
TID=Os.54106.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.54106 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-105-G08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033076N12, full insert sequence.
FL= gb:AK101973.1 gb:AK105181.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3518010/11co-chaperone GrpE family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g35130Os.9065.1.S1_at11/114+21162406..21165881Harpin-induced protein 1 containing protein, expressed
LOC_Os04g35130OsAffx.26340.1.S1_x_at10/114+21162406..21165881Harpin-induced protein 1 containing protein, expressed
LOC_Os04g35140Os.54412.1.S1_at11/114+21171564..21174134Subtilisin N-terminal Region family protein, expressed
LOC_Os04g35150OsAffx.14142.1.S1_at11/114+21174989..21178008Thioredoxin family protein
LOC_Os04g35160OsAffx.14143.1.S1_at11/114+21181147..21184341CorA-like Mg2+ transporter protein, expressed
LOC_Os04g35160OsAffx.15607.1.S1_at1/114+21181147..21184341CorA-like Mg2+ transporter protein, expressed
LOC_Os04g35170Os.23819.1.S1_s_at11/114+21186131..21189779expressed protein
LOC_Os04g35180Os.54106.1.S1_at10/114+21189911..21192157co-chaperone GrpE family protein, expressed
LOC_Os04g35190Os.38242.1.S1_at11/114+21193582..21198485F-box domain containing protein, expressed
LOC_Os04g35200NANA4+21199819..21200915hypothetical protein
LOC_Os04g35210OsAffx.14145.1.S1_at10/114+21211096..21214650Leucine Rich Repeat family protein, expressed
LOC_Os04g35220Os.48068.1.S1_at11/114+21215084..21218002Transcription termination factor nusG family protein, expressed
LOC_Os04g35220Os.48068.1.S1_x_at11/114+21215084..21218002Transcription termination factor nusG family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54106.1.S1_at--694--351Chr04:21190719..21190743 (25 bp)
ATCAAGAGATCACCCCGGAGACTGA
LOC_Os04g35180
Os.54106.1.S1_at--1043--10751NONE
TTGGCAAGCCATTTGATCCTTCGAT
NONE
Os.54106.1.S1_at--337--6571Chr04:21190348..21190372 (25 bp)
GATTCATGAGGCTATCGCACGCGAG
LOC_Os04g35180
Os.54106.1.S1_at--608--5091Chr04:21190332..21190356 (25 bp)
GCACGCGAGGAATCTCATCAGTTCA
LOC_Os04g35180
Os.54106.1.S1_at--146--2951Chr04:21190308..21190332 (25 bp)
AAGGCTGGGATTGTCTCGCATGAAG
LOC_Os04g35180
Os.54106.1.S1_at--122--4631Chr04:21190291..21190315 (25 bp)
GCATGAAGTCAAACGCGGGTTCCTT
LOC_Os04g35180
Os.54106.1.S1_at--830--1951Chr04:21190239..21190263 (25 bp)
ACTGTGAAGGTCTCAACCGGCTCTG
LOC_Os04g35180
Os.54106.1.S1_at--67--611Chr04:21190157..21190181 (25 bp)
ATGCCGCTGTCTGAATCTGCTGGAA
LOC_Os04g35180
Os.54106.1.S1_at--68--1511Chr04:21190073..21190097 (25 bp)
AGCACCATTCTTTGGGAGCTCATTT
LOC_Os04g35180
Os.54106.1.S1_at--856--651Chr04:21189956..21189980 (25 bp)
ATGAATTTCTTTTCCCCTGTGCAAT
LOC_Os04g35180
Os.54106.1.S1_at--354--791Chr04:21189929..21189953 (25 bp)
ATGTGATTTTATTTCTCCCACGAAA
LOC_Os04g35180
Target Sequence 
ATCAAGAGATCACCCCGGAGACTGATAAAGAGCAGACGATTAGCACAAGCTATCAAGGCATATACAAGCAGTTAGTAGAG
ACATTGAGAAGCTTAGGTGTAGGAGTTGTGGAAACAGTTGGCAAGCCATTTGATCCTTCGATTCATGAGGCTATCGCACG
CGAGGAATCTCATCAGTTCAAGGCTGGGATTGTCTCGCATGAAGTCAAACGCGGGTTCCTTCTAAGGGAGAGGCTGCTAA
GGCCTGCCACTGTGAAGGTCTCAACCGGCTCTGGCACCCAGGAGACGAGCTCCCCATCTACAGAGAAGCCTGTGGAGGAT
AGCAAAGAAGATGCCGCTGTCTGAATCTGCTGGAAACTGGAATCCTGGAAATCCAACCGACAAAATCAGGAAATCAGTAG
CAAGTTATAGCTAGAGCACCATTCTTTGGGAGCTCATTTTTTTTACTGTCCATACCATGCGAAGGTTTTGTGTTCCAAAT
GGGTGTCTTTATGTGTACATTTTCATAGCGATTTCAAGCTACTATTTTTAAATGAATTTCTTTTCCCCTGTGCAATCAAT
GTGATTTTATTTCTCCCACGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54106.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis