Browse Element(s) Details


Os.54412.1.S1_at

Description gb:AK105112.1
DB_XREF= gi:32990321
TID=Os.54412.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.54412 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-100-G01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-100-G01, full insert sequence.
FL= gb:AK105112.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3514011/11Subtilisin N-terminal Region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g35100Os.8221.1.S1_a_at11/114+21144844..21148155MAP3K-like protein kinase, putative, expressed
LOC_Os04g35114Os.36212.1.S1_at10/114+21153387..21157199Protein kinase domain containing protein, expressed
LOC_Os04g35130Os.9065.1.S1_at11/114+21162406..21165881Harpin-induced protein 1 containing protein, expressed
LOC_Os04g35130OsAffx.26340.1.S1_x_at10/114+21162406..21165881Harpin-induced protein 1 containing protein, expressed
LOC_Os04g35140Os.54412.1.S1_at11/114+21171564..21174134Subtilisin N-terminal Region family protein, expressed
LOC_Os04g35150OsAffx.14142.1.S1_at11/114+21174989..21178008Thioredoxin family protein
LOC_Os04g35160OsAffx.14143.1.S1_at11/114+21181147..21184341CorA-like Mg2+ transporter protein, expressed
LOC_Os04g35160OsAffx.15607.1.S1_at1/114+21181147..21184341CorA-like Mg2+ transporter protein, expressed
LOC_Os04g35170Os.23819.1.S1_s_at11/114+21186131..21189779expressed protein
LOC_Os04g35180Os.54106.1.S1_at10/114+21189911..21192157co-chaperone GrpE family protein, expressed
LOC_Os04g35190Os.38242.1.S1_at11/114+21193582..21198485F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0009827biological_processcell wall modification (sensu Magnoliophyta)
GO:0005576cellular_componentextracellular region
GO:0048196cellular_componentextracellular matrix (sensu Magnoliophyta)
GO:0004252molecular_functionserine-type endopeptidase activity
GO:0004289molecular_functionsubtilase activity
GO:0008236molecular_functionserine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54412.1.S1_at--648--9711Chr04:21173577..21173601 (25 bp)
TCAACTATCCGTCGTTCATGGTCAT
LOC_Os04g35140
Os.54412.1.S1_at--1159--9631Chr04:21173766..21173790 (25 bp)
TCAGTGTGACGGTGCAGGTCAGCCA
LOC_Os04g35140
Os.54412.1.S1_at--762--2071Chr04:21173820..21173844 (25 bp)
ACATTGGCAACTATGGGTTCTTGAG
LOC_Os04g35140
Os.54412.1.S1_at--693--4411Chr04:21173862..21173886 (25 bp)
GCCAGCATGTTGTCAGGAGCCCTAT
LOC_Os04g35140
Os.54412.1.S1_at--970--7111Chr04:21173873..21173897 (25 bp)
GTCAGGAGCCCTATAGTGTCAGCAT
LOC_Os04g35140
Os.54412.1.S1_at--240--7451Chr04:21173888..21173912 (25 bp)
GTGTCAGCATTTGCCCAATGAGAAG
LOC_Os04g35140
Os.54412.1.S1_at--250--3431Chr04:21173915..21173939 (25 bp)
CAGATGTTAGCATAGCAGGATCAAA
LOC_Os04g35140
Os.54412.1.S1_at--788--5591Chr04:21174041..21174065 (25 bp)
GAAATAATTCTCACCAGGATACTGA
LOC_Os04g35140
Os.54412.1.S1_at--989--1711Chr04:21174053..21174077 (25 bp)
ACCAGGATACTGATATTGCACGTGT
LOC_Os04g35140
Os.54412.1.S1_at--83--231Chr04:21174065..21174089 (25 bp)
ATATTGCACGTGTATTTTTGTACTC
LOC_Os04g35140
Os.54412.1.S1_at--17--191Chr04:21174078..21174102 (25 bp)
ATTTTTGTACTCTCTGCTTCTGAAT
LOC_Os04g35140
Target Sequence 
TCAACTATCCGTCGTTCATGGTCATCCTCAACAAAACCAACTCGGCCACACGGACGTTCACNAGGACGCTGACCAACGTC
GCCGGCTCGCCGGCGAAGTACGCCGTGTCGGTGACGGCGCCGGCGGGGATGGCGGTGAAGGTGACGCCGGCGACGCTGTC
CTTCGCCGGCAAGGGCAGCACGCAGGGGTTCAGTGTGACGGTGCAGGTCAGCCAGGTGAAGAGATCAAGAGATGGTGACA
ATTACATTGGCAACTATGGGTTCTTGAGCTGGAATGAGGTCGGAGGCCAGCATGTTGTCAGGAGCCCTATAGTGTCAGCA
TTTGCCCAATGAGAAGAACAGATGTTAGCATAGCAGGATCAAAAATAAGAGCATGGAAATAGAAAATGACACTAAAACAA
AGTATACTACATACAACTAATAATCATGATCAGGAATATAAAGAGTACATATAATGGAAAGAGAGAAATAATTCTCACCA
GGATACTGATATTGCACGTGTATTTTTGTACTCTCTGCTTCTGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54412.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis