Browse Element(s) Details


OsAffx.14142.1.S1_at

Description tigr:9632.m03380
TID=OsAffx.14142.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Thioredoxin, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3515011/11Thioredoxin family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g35114Os.36212.1.S1_at10/114+21153387..21157199Protein kinase domain containing protein, expressed
LOC_Os04g35130Os.9065.1.S1_at11/114+21162406..21165881Harpin-induced protein 1 containing protein, expressed
LOC_Os04g35130OsAffx.26340.1.S1_x_at10/114+21162406..21165881Harpin-induced protein 1 containing protein, expressed
LOC_Os04g35140Os.54412.1.S1_at11/114+21171564..21174134Subtilisin N-terminal Region family protein, expressed
LOC_Os04g35150OsAffx.14142.1.S1_at11/114+21174989..21178008Thioredoxin family protein
LOC_Os04g35160OsAffx.14143.1.S1_at11/114+21181147..21184341CorA-like Mg2+ transporter protein, expressed
LOC_Os04g35160OsAffx.15607.1.S1_at1/114+21181147..21184341CorA-like Mg2+ transporter protein, expressed
LOC_Os04g35170Os.23819.1.S1_s_at11/114+21186131..21189779expressed protein
LOC_Os04g35180Os.54106.1.S1_at10/114+21189911..21192157co-chaperone GrpE family protein, expressed
LOC_Os04g35190Os.38242.1.S1_at11/114+21193582..21198485F-box domain containing protein, expressed
LOC_Os04g35200NANA4+21199819..21200915hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0030508molecular_functionthiol-disulfide exchange intermediate activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14142.1.S1_at--511--1551Chr04:21176737..21176761 (25 bp)
AGCTTGACACTGATGATTACCCACA
LOC_Os04g35150
OsAffx.14142.1.S1_at--379--151Chr04:21176722..21176746 (25 bp)
ATTACCCACAAGTCGCAACATCTTA
LOC_Os04g35150
OsAffx.14142.1.S1_at--328--6151Chr04:21176688..21176712 (25 bp)
GAGGATTCCAACTGTTTTACTCTTT
LOC_Os04g35150
OsAffx.14142.1.S1_at--180--4951Chr04:21176646..21176670 (25 bp)
GCATAGCATTACTGGGACTCTTCCG
LOC_Os04g35150
OsAffx.14142.1.S1_at--695--5714Chr12:12360527..12360667 (24 bp)
GACTCTTCCGAAGGCTGTTTATATA
NONE
OsAffx.14142.1.S1_at--472--271Chr04:21176032..21176056 (25 bp)
ATATGGTATGTCACTTCTCTTTCAA
LOC_Os04g35150
OsAffx.14142.1.S1_at--992--6751Chr04:21175707..21175731 (25 bp)
GTTAGCCTTTTTTGCACCAGGATTT
LOC_Os04g35150
OsAffx.14142.1.S1_at--735--5591Chr04:21175674..21175698 (25 bp)
GAAATACTACCTTCGGGTCAGCTCA
LOC_Os04g35150
OsAffx.14142.1.S1_at--833--8831Chr04:21175534..21175558 (25 bp)
TGATAGTGGCAACCCGCAAGCATGT
LOC_Os04g35150
OsAffx.14142.1.S1_at--186--5171Chr04:21175519..21175543 (25 bp)
GCAAGCATGTACTAGCACTCAGGCA
LOC_Os04g35150
OsAffx.14142.1.S1_at--367--311Chr04:21175049..21175073 (25 bp)
ATACCTTGTTACTGAAGCTCGCAAT
LOC_Os04g35150
Target Sequence 
AGCTTGACACTGATGATTACCCACAAGTCGCAACATCTTACAGCATCGAGAGGATTCCAACTGTTTTACTCTTTAAGGAT
GGAGAGAAAACGCATAGCATTACTGGGACTCTTCCGAAGGCTGTTTATATATCTGGTATTATTTTAGATTCCACAATTCT
TACAGTTATATTTATGCATGCAGATGCAGCTAATCAGCTGAAGGTTTTTCTTCTCATATGGTATGTCACTTCTCTTTCAA
GTAGCTTTACAAGGTTATATTTGTTAGCCTTTTTTGCACCAGGATTTGTGCTTCTGAAATACTACCTTCGGGTCAGCTCA
GGAACCCATGCGATCTGGGGGGATCCTAGTATTGCATATGAGTATATCAGGATGATAGTGGCAACCCGCAAGCATGTACT
AGCACTCAGGCAGCAAGCGCTGATACTCAGACTGATGAGTCGAAATCTTGGTATCATCTCATATTCTGAGCTGTTCCCCT
TCCTCACAAGTAGAAGAGAACAAAAGATATACCTTGTTACTGAAGCTCGCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14142.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis