Browse Element(s) Details


Os.36212.1.S1_at

Description gb:AK064161.1
DB_XREF= gi:32974179
TID=Os.36212.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.36212 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0042L16.1 (OSJNBa0042L16.1), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-103-G03, full insert sequence.
FL= gb:AK064161.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3511410/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g35060Os.18679.1.S1_at11/114+21123052..21130812nicotinate phosphoribosyltransferase, putative, expressed
LOC_Os04g35070Os.51564.1.S1_at11/114+21132258..21133214expressed protein
LOC_Os04g35070Os.51564.1.S1_s_at11/114+21132258..21133214expressed protein
LOC_Os04g35080Os.9839.1.S1_at11/114+21135719..21139578Protein kinase domain containing protein, expressed
LOC_Os04g35080OsAffx.26339.1.S1_x_at10/114+21135719..21139578Protein kinase domain containing protein, expressed
LOC_Os04g35090Os.426.1.S1_at8/114+21142239..2114481040S ribosomal protein S10, putative, expressed
LOC_Os04g35100Os.8221.1.S1_a_at11/114+21144844..21148155MAP3K-like protein kinase, putative, expressed
LOC_Os04g35114Os.36212.1.S1_at10/114+21153387..21157199Protein kinase domain containing protein, expressed
LOC_Os04g35130Os.9065.1.S1_at11/114+21162406..21165881Harpin-induced protein 1 containing protein, expressed
LOC_Os04g35130OsAffx.26340.1.S1_x_at10/114+21162406..21165881Harpin-induced protein 1 containing protein, expressed
LOC_Os04g35140Os.54412.1.S1_at11/114+21171564..21174134Subtilisin N-terminal Region family protein, expressed
LOC_Os04g35150OsAffx.14142.1.S1_at11/114+21174989..21178008Thioredoxin family protein
LOC_Os04g35160OsAffx.14143.1.S1_at11/114+21181147..21184341CorA-like Mg2+ transporter protein, expressed
LOC_Os04g35160OsAffx.15607.1.S1_at1/114+21181147..21184341CorA-like Mg2+ transporter protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36212.1.S1_at--278--1451Chr04:21156644..21156668 (25 bp)
AGAACCTCGTGGAATGGTCGCGCGA
LOC_Os04g35114
Os.36212.1.S1_at--792--2971Chr04:21156656..21156680 (25 bp)
AATGGTCGCGCGAGCTGATCGGCAC
LOC_Os04g35114
Os.36212.1.S1_at--457--8851Chr04:21156671..21156695 (25 bp)
TGATCGGCACGGACTACCGGCTGCA
LOC_Os04g35114
Os.36212.1.S1_at--389--871Chr04:21156751..21156775 (25 bp)
ATGGCCGATGTGATCCACTGGTGCA
LOC_Os04g35114
Os.36212.1.S1_at--882--9291Chr04:21156818..21156842 (25 bp)
TCCGCATCCTGTACGAGCGCCTGGA
LOC_Os04g35114
Os.36212.1.S1_at--944--5491NONE
GAACACGTCCAGGTCGTACTGCAGC
NONE
Os.36212.1.S1_at--373--9111Chr04:21157022..21157046 (25 bp)
TGCTGCTTGAGTGCAACTCGCCGGA
LOC_Os04g35114
Os.36212.1.S1_at--311--4151Chr04:21157072..21157096 (25 bp)
CGCGGCTTGCCGTGACACCGTGACA
LOC_Os04g35114
Os.36212.1.S1_at--746--7192Chr05:2528749..2528769 (21 bp)
GTCGGTTGCATCGACAGATTTTGCA
NONE
Os.36212.1.S1_at--441--6531Chr04:21157125..21157149 (25 bp)
GATTTTGCAGGACACAACGTACAGT
LOC_Os04g35114
Os.36212.1.S1_at--812--3251Chr04:21157139..21157163 (25 bp)
CAACGTACAGTGAACAGTCGAAACA
LOC_Os04g35114
Target Sequence 
AGAACCTCGTGGAATGGTCGCGCGAGCTGATCGGCACGGACTACCGGCTGCACGAGCTGGTCGACCCGGCGGTGGCCGAC
GCGTTCGACCTGGACGAGCTGCAGGTGATGGCCGATGTGATCCACTGGTGCACCCACCGGGACGGCGCCGCGCGGCCGTC
GATGAAGCAGGTGCTCCGCATCCTGTACGAGCGCCTGGACCCGCTCTCCGGCGGCCTCGCCCGCGCCGTCGCCGGCGAGG
AAGGGTACTACTACGGCGGCTGGCAGAGCGGGCGGAAGGGGAAGGAGGGCGCGGAGATGCTGGCCGGCGGCGGCGGCGAC
GGTGGTCGGTGCCTGCCGTCGTCGTCGAACACGTCCAGGTCGTACTGCAGCCGCAGCGTGCTGCTTGAGTGCAACTCGCC
GGAGGAGGCGCCGTCCCAGTCGTCGCCGCGCGGCTTGCCGTGACACCGTGACACGCCATCTTTTTGTCGGTTGCATCGAC
AGATTTTGCAGGACACAACGTACAGTGAACAGTCGAAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36212.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis