Browse Element(s) Details


Os.9839.1.S1_at

Description gb:AK100142.1
DB_XREF= gi:32985351
TID=Os.9839.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9839 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0042L16.4 (OSJNBa0042L16.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023011I08, full insert sequence.
FL= gb:AK100142.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3508011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g35050Os.19099.1.S1_x_at1/114+21112026..21113155retrotransposon, putative, centromere-specific
LOC_Os04g35060Os.18679.1.S1_at11/114+21123052..21130812nicotinate phosphoribosyltransferase, putative, expressed
LOC_Os04g35070Os.51564.1.S1_at11/114+21132258..21133214expressed protein
LOC_Os04g35070Os.51564.1.S1_s_at11/114+21132258..21133214expressed protein
LOC_Os04g35080Os.9839.1.S1_at11/114+21135719..21139578Protein kinase domain containing protein, expressed
LOC_Os04g35080OsAffx.26339.1.S1_x_at10/114+21135719..21139578Protein kinase domain containing protein, expressed
LOC_Os04g35090Os.426.1.S1_at8/114+21142239..2114481040S ribosomal protein S10, putative, expressed
LOC_Os04g35100Os.8221.1.S1_a_at11/114+21144844..21148155MAP3K-like protein kinase, putative, expressed
LOC_Os04g35114Os.36212.1.S1_at10/114+21153387..21157199Protein kinase domain containing protein, expressed
LOC_Os04g35130Os.9065.1.S1_at11/114+21162406..21165881Harpin-induced protein 1 containing protein, expressed
LOC_Os04g35130OsAffx.26340.1.S1_x_at10/114+21162406..21165881Harpin-induced protein 1 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9839.1.S1_at--252--2691Chr04:21139108..21139132 (25 bp)
AAGCGGCGGCCTAGCTATTAGCAAG
LOC_Os04g35080
Os.9839.1.S1_at--465--6531Chr04:21139164..21139188 (25 bp)
GATTTTTCTGAATTCTTACACCTGA
LOC_Os04g35080
Os.9839.1.S1_at--817--4211Chr04:21139204..21139228 (25 bp)
CCGCAAACTTGCAAACAGCTCATTT
LOC_Os04g35080
Os.9839.1.S1_at--671--9591Chr04:21139223..21139247 (25 bp)
TCATTTGCTGCTCGTTAGTTGGGTT
LOC_Os04g35080
Os.9839.1.S1_at--74--4171Chr04:21139269..21139293 (25 bp)
CGCCGAGATCGTGAGAGCATCTGTA
LOC_Os04g35080
Os.9839.1.S1_at--328--5631Chr04:21139379..21139403 (25 bp)
GACAAATTCATGTTACTCTTGAGGT
LOC_Os04g35080
Os.9839.1.S1_at--1008--7311Chr04:21139419..21139443 (25 bp)
GTGCTTAGATAAAACCTTCCATGTA
LOC_Os04g35080
Os.9839.1.S1_at--273--3031Chr04:21139459..21139483 (25 bp)
AATGCCAGTTTGCTCATCAGTCATC
LOC_Os04g35080
Os.9839.1.S1_at--698--7131Chr04:21139478..21139502 (25 bp)
GTCATCATACAATGCTCAGTTTCTT
LOC_Os04g35080
Os.9839.1.S1_at--258--2051Chr04:21139505..21139529 (25 bp)
ACTTTTGAGATCCATACTTGTCACC
LOC_Os04g35080
Os.9839.1.S1_at--37--1411Chr04:21139554..21139578 (25 bp)
AGACTGAATCCTCAGGTGTGTGCCC
LOC_Os04g35080
Target Sequence 
AAGCGGCGGCCTAGCTATTAGCAAGATGGTGATTCTTCTGAATTCAGTAAGACGACGATTTTTCTGAATTCTTACACCTG
ATCAAGAAACCGAATGCCGCAAACTTGCAAACAGCTCATTTGCTGCTCGTTAGTTGGGTTGGGGCACGGAAACATGGAAC
GCGCCGAGATCGTGAGAGCATCTGTACATTATTGGGTTAGTATGTTAGCCATAGCGATTTTTTGGTTGGTTTATTTGGTT
ATATTTATGTACTAAGTGATAATTCTTGTATGACAAATTCATGTTACTCTTGAGGTAAAAGTTGATGAGCGGTGCTTAGA
TAAAACCTTCCATGTAGCAATATATCCCCCAAATGCCAGTTTGCTCATCAGTCATCATACAATGCTCAGTTTCTTATACT
TTTGAGATCCATACTTGTCACCTAAATTGTGATGATTCAATATACCAGACTGAATCCTCAGGTGTGTGCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9839.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis