Browse Element(s) Details


Os.23819.1.S1_s_at

Description gb:AK111961.1
DB_XREF= gi:37988624
TID=Os.23819.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.23819 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-031-D07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-031-D07, full insert sequence.
FL= gb:AK111961.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3517011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g35130Os.9065.1.S1_at11/114+21162406..21165881Harpin-induced protein 1 containing protein, expressed
LOC_Os04g35130OsAffx.26340.1.S1_x_at10/114+21162406..21165881Harpin-induced protein 1 containing protein, expressed
LOC_Os04g35140Os.54412.1.S1_at11/114+21171564..21174134Subtilisin N-terminal Region family protein, expressed
LOC_Os04g35150OsAffx.14142.1.S1_at11/114+21174989..21178008Thioredoxin family protein
LOC_Os04g35160OsAffx.14143.1.S1_at11/114+21181147..21184341CorA-like Mg2+ transporter protein, expressed
LOC_Os04g35160OsAffx.15607.1.S1_at1/114+21181147..21184341CorA-like Mg2+ transporter protein, expressed
LOC_Os04g35170Os.23819.1.S1_s_at11/114+21186131..21189779expressed protein
LOC_Os04g35180Os.54106.1.S1_at10/114+21189911..21192157co-chaperone GrpE family protein, expressed
LOC_Os04g35190Os.38242.1.S1_at11/114+21193582..21198485F-box domain containing protein, expressed
LOC_Os04g35200NANA4+21199819..21200915hypothetical protein
LOC_Os04g35210OsAffx.14145.1.S1_at10/114+21211096..21214650Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23819.1.S1_s_at--1075--2411Chr04:21188578..21188602 (25 bp)
AAAACATGGCAAACCCTGCTGTGAC
LOC_Os04g35170
Os.23819.1.S1_s_at--647--2131Chr04:21188604..21188628 (25 bp)
ACAGATGTTCTTCCTGGTATCCAAG
LOC_Os04g35170
Os.23819.1.S1_s_at--1126--651Chr04:21188688..21188712 (25 bp)
ATGCAAACAGATCTTCCCAATGGGA
LOC_Os04g35170
Os.23819.1.S1_s_at--659--10111Chr04:21188970..21188993 (24 bp)
TATGGTTCTCTTAGCGATATCGGTT
LOC_Os04g35170
Os.23819.1.S1_s_at--270--10231Chr04:21189403..21189427 (25 bp)
TTTGGGACCAGCAACCTCAGGACTA
LOC_Os04g35170
Os.23819.1.S1_s_at--216--8931Chr04:21189441..21189465 (25 bp)
TGACCAGGCGCCAAATTGCTGTTGT
LOC_Os04g35170
Os.23819.1.S1_s_at--936--6711Chr04:21189479..21189503 (25 bp)
GTTCTGTAACCCTGTAACTGCAATA
LOC_Os04g35170
Os.23819.1.S1_s_at--747--331Chr04:21189532..21189556 (25 bp)
ATACAGGCACCCATGGTGGCCATAT
LOC_Os04g35170
Os.23819.1.S1_s_at--1147--871Chr04:21189562..21189586 (25 bp)
AGGCCAATGTCCTGTCTAACTACAC
LOC_Os04g35170
Os.23819.1.S1_s_at--261--10191Chr04:21189593..21189617 (25 bp)
TATAGCTGGAGCCTTTGATCCTTCC
LOC_Os04g35170
Os.23819.1.S1_s_at--552--6351Chr04:21189609..21189633 (25 bp)
GATCCTTCCAGGTCAATATCAACAG
LOC_Os04g35170
Target Sequence 
AAAACATGGCAAACCCTGCTGTGACCACAGATGTTCTTCCTGGTATCCAAGATGGATATAATTTTGCGATTTCAGATTAT
CTTGGTGCTGATATACCATGCTACCAACCAATGCAAACAGATCTTCCCAATGGGATGAGCCTAAATGATTCAGAGGGCAT
TACTGTCATGGATGATTCAATATATGGTTCTCTTAGCGATATCGGTTTTATGGAGGTTTGGGACCAGCAACCTCAGGACT
ACGAGAAGTTCTTCTGACCAGGCGCCAAATTGCTGTTGTCAGTGCTGTGACAGTTCTGTAACCCTGTAACTGCAATAATC
AGAAAAACACACACACACAACACACATACAGGCACCCATGGTGGCCATATGATCCAGGCCAATGTCCTGTCTAACTACAC
ATCATATATAGCTGGAGCCTTTGATCCTTCCAGGTCAATATCAACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23819.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis