Browse Element(s) Details


Os.50062.1.S1_at

Description gb:AK119808.1
DB_XREF= gi:37989431
TID=Os.50062.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.50062 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013075N08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-176-H01, full insert sequence.
FL= gb:AK099708.1 gb:AK119808.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2173011/11leucine-rich repeat transmembrane protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g21700Os.54916.1.S1_at11/113+12368897..12370451expressed protein
LOC_Os03g21710NANA3+12373502..12375288WRKY DNA binding domain containing protein
LOC_Os03g21720Os.9262.1.S1_at11/113+12380772..12387306Vacuolar sorting receptor 1 precursor, putative, expressed
LOC_Os03g21720Os.9262.1.S2_at11/113+12380772..12387306Vacuolar sorting receptor 1 precursor, putative, expressed
LOC_Os03g21730Os.50062.1.S1_at11/113+12390108..12393951leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os03g21740Os.27048.1.S1_at11/113+12401416..12410317Valyl-tRNA synthetase, putative
LOC_Os03g21750OsAffx.12979.1.S1_at11/113+12412084..12412909hypothetical protein
LOC_Os03g21759NANA3+12415573..12416581hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50062.1.S1_at--844--10231Chr03:12393356..12393380 (25 bp)
TTTGGAGTTCTTGCCCTTGAGATAT
LOC_Os03g21730
Os.50062.1.S1_at--316--5631Chr03:12393391..12393415 (25 bp)
GACACCGGTGCAGTACATGGAAGAT
LOC_Os03g21730
Os.50062.1.S1_at--1087--191Chr03:12393502..12393526 (25 bp)
ATTTCCGCTAGAGGAGGCTGTTCCA
LOC_Os03g21730
Os.50062.1.S1_at--1057--5531Chr03:12393532..12393556 (25 bp)
GAAACTTGGTCTAGTGTGCACTTCT
LOC_Os03g21730
Os.50062.1.S1_at--1144--7871Chr03:12393559..12393583 (25 bp)
GGTTCCTTCCAATAGGCCAGACATG
LOC_Os03g21730
Os.50062.1.S1_at--875--9791Chr03:12393650..12393674 (25 bp)
TAAGCTCTATCTGATGTGGTTCCCT
LOC_Os03g21730
Os.50062.1.S1_at--566--5591Chr03:12393837..12393861 (25 bp)
GAAATAGTTTCATGGCCTGTGGCTG
LOC_Os03g21730
Os.50062.1.S1_at--1158--4471Chr03:12393851..12393875 (25 bp)
GCCTGTGGCTGTTGATGTGTTTGAC
LOC_Os03g21730
Os.50062.1.S1_at--243--791Chr03:12393865..12393889 (25 bp)
ATGTGTTTGACTCTGATCCTCATCA
LOC_Os03g21730
Os.50062.1.S1_at--1055--731Chr03:12393892..12393916 (25 bp)
ATGTTAACTGTTGTGGATCCTCTCA
LOC_Os03g21730
Os.50062.1.S1_at--772--7511Chr03:12393904..12393928 (25 bp)
GTGGATCCTCTCACATCAATTATAT
LOC_Os03g21730
Target Sequence 
TTTGGAGTTCTTGCCCTTGAGATATTGACAGGGAGGACACCGGTGCAGTACATGGAAGATGATGTTATTGTGCTTTGCGA
TGTGGTAAGGGCTGCTTTGGATGAAGGGAAGGTGGAAGAGTGTGTTGATGAGAGGCTCTGCGGAAAATTTCCGCTAGAGG
AGGCTGTTCCAATCATGAAACTTGGTCTAGTGTGCACTTCTCAGGTTCCTTCCAATAGGCCAGACATGAGTGAGGTGGTG
AACATACTGGAGTTGATCAGATGCCCCCAGGATAGCCCTGAAACTGAATTAGGTTAAGCTCTATCTGATGTGGTTCCCTT
TTTTGTTAGTTTTCTTATTCCATTTTAAGATCCTTCTTTGCTTGGCAACTGATAAAATGATGAGACATGAAGGGGATTCT
ATCTGTTATGCTTAGTACTAGGAGCAAGTGTGAAGTTTCTGGGTAGTATTTTGGTAGCTAAGGAGTTATTATGTAATGCA
TGAAATAGTTTCATGGCCTGTGGCTGTTGATGTGTTTGACTCTGATCCTCATCAGGATGTTAACTGTTGTGGATCCTCTC
ACATCAATTATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50062.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis