Browse Element(s) Details


Os.50152.1.S1_at

Description gb:AK119951.1
DB_XREF= gi:37989574
TID=Os.50152.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50152 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-184-C05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-184-C05, full insert sequence.
FL= gb:AK119951.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5977011/11EF hand family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g59750Os.21886.1.S1_at10/113+33949799..33954576DNA gyrase subunit A, putative, expressed
LOC_Os03g59754NANA3+33965067..33965465hypothetical protein
LOC_Os03g59760Os.14544.1.S1_at11/113+33970386..33972964Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g59770Os.50152.1.S1_at11/113+33975180..33976026EF hand family protein, expressed
LOC_Os03g59770OsAffx.3648.1.S1_x_at1/113+33975180..33976026EF hand family protein, expressed
LOC_Os03g59780NANA3+33985215..33985823hypothetical protein
LOC_Os03g59790OsAffx.3648.1.S1_x_at11/113+33989380..33989982EF hand family protein
LOC_Os03g59810OsAffx.20329.1.S1_at2/113+33995491..33999903retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g59820NANA3+34000254..34001240hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50152.1.S1_at--401--911Chr03:33975495..33975519 (25 bp)
AGGCGGGAATGCGAGCTGTGCGCTC
LOC_Os03g59770
Os.50152.1.S1_at--321--6731Chr03:33975701..33975725 (25 bp)
GTTCTACGTGTTCGATCGCGACGAG
LOC_Os03g59770
Os.50152.1.S1_at--1063--8511Chr03:33975877..33975901 (25 bp)
TGGAGAACGCGGTTTAGACGTACTT
LOC_Os03g59770
Os.50152.1.S1_at--393--10011Chr03:33975891..33975915 (25 bp)
TAGACGTACTTGACGGTCCGGAGTT
LOC_Os03g59770
Os.50152.1.S1_at--409--5731Chr03:33975902..33975926 (25 bp)
GACGGTCCGGAGTTCATACCTCCTA
LOC_Os03g59770
Os.50152.1.S1_at--1071--9591Chr03:33975915..33975939 (25 bp)
TCATACCTCCTACTACTACATTGTA
LOC_Os03g59770
Os.50152.1.S1_at--1030--1731Chr03:33975919..33975943 (25 bp)
ACCTCCTACTACTACATTGTATTTA
LOC_Os03g59770
Os.50152.1.S1_at--965--6031Chr03:33975944..33975968 (25 bp)
GAGATTTAACGGATACTATTTCAGC
LOC_Os03g59770
Os.50152.1.S1_at--1030--6471Chr03:33975955..33975979 (25 bp)
GATACTATTTCAGCGTTCCAGATGG
LOC_Os03g59770
Os.50152.1.S1_at--615--3691Chr03:33975959..33975983 (25 bp)
CTATTTCAGCGTTCCAGATGGTAAA
LOC_Os03g59770
Os.50152.1.S1_at--262--3231Chr03:33975998..33976022 (25 bp)
CAAGTTTTGTTGAATTAAGCTCGGA
LOC_Os03g59770
Target Sequence 
AGGCGGGAATGCGAGCTGTGCGCTCGTAGGGGCGGCGCCGGGCTGTCGCGCCACGACGTCGCGGCGGTCGTGGCGAGCCT
CGGCATGGTCGCCGCCGGCGAAGATGACGACGACGACGACGAGGCGTGCGGCGTGTGCGAGGCGGTGGCGGCGGTGGAGG
AGATGGCGGAGGGGAAGGTGGCCGGGGAGGGCGAGCTGCGGGAGGCGTTCTACGTGTTCGATCGCGACGAGGACGGGTAC
GTGAGCGCGGCGGAGCTGTGGAACGTGATGCGGAGGCTGGGCATTGAGGAGGGCGCGCGGTACGGCGACTGCGTCAGGAT
GATCGCGGCGTACGACGGCGACGGCGATGGCCGGATCAGCTTCCAGGAGTTCAGAGCCATGATGGAGAACGCGGTTTAGA
CGTACTTGACGGTCCGGAGTTCATACCTCCTACTACTACATTGTATTTAGAGATTTAACGGATACTATTTCAGCGTTCCA
GATGGTAAAATGTTTAATTACGACAAGTTTTGTTGAATTAAGCTCGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50152.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis