Browse Element(s) Details


Os.21886.1.S1_at

Description gb:AK059281.1
DB_XREF= gi:32969299
TID=Os.21886.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.21886 (NCBI UniGene Cluster)
UG_TITLE=Hypothetical protein mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-025-D02, full insert sequence.
FL= gb:AK059281.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5975010/11DNA gyrase subunit A, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g59680Os.19299.1.S1_at10/113+33927150..33930840PAPA-1-like conserved region family protein, expressed
LOC_Os03g59690OsAffx.3645.1.S1_x_at11/113+33933259..33934209uncharacterized plant-specific domain TIGR01570 family protein
LOC_Os03g59690OsAffx.22199.2.S1_x_at1/113+33933259..33934209uncharacterized plant-specific domain TIGR01570 family protein
LOC_Os03g59700Os.27981.1.S1_at10/113+33934520..33937603Peptidyl-prolyl cis-trans isomerase H, putative, expressed
LOC_Os03g59710Os.6036.1.S1_s_at11/113+33937742..33938580Pre-mRNA branch site p14, putative, expressed
LOC_Os03g59710Os.5336.1.S1_at11/113+33937742..33938580Pre-mRNA branch site p14, putative, expressed
LOC_Os03g59720Os.27962.1.A1_at11/113+33939999..33941322ribosomal protein L36 containing protein, expressed
LOC_Os03g59730OsAffx.25773.1.S1_at10/113+33941973..33944596No apical meristem protein
LOC_Os03g59740Os.12389.1.S1_x_at11/113+33945831..33948743ADP-ribosylation factor, putative, expressed
LOC_Os03g59740Os.12389.1.S1_at11/113+33945831..33948743ADP-ribosylation factor, putative, expressed
LOC_Os03g59750Os.21886.1.S1_at10/113+33949799..33954576DNA gyrase subunit A, putative, expressed
LOC_Os03g59754NANA3+33965067..33965465hypothetical protein
LOC_Os03g59760Os.14544.1.S1_at11/113+33970386..33972964Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g59770Os.50152.1.S1_at11/113+33975180..33976026EF hand family protein, expressed
LOC_Os03g59770OsAffx.3648.1.S1_x_at1/113+33975180..33976026EF hand family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0003824molecular_functioncatalytic activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21886.1.S1_at--4--2331Chr03:33950805..33950829 (25 bp)
AAAGATATATCCATCCGGTCTCGTT
LOC_Os03g59750
Os.21886.1.S1_at--842--8191Chr03:33950284..33950308 (25 bp)
GGAAGATCCAGTCAGCCTCACTAAT
LOC_Os03g59750
Os.21886.1.S1_at--1070--5811Chr03:33950231..33950255 (25 bp)
GACCCGGAGTCAGCCTCACTAATAT
LOC_Os03g59750
Os.21886.1.S1_at--324--9011Chr03:33950136..33950160 (25 bp)
TGAAGGCCTCGCTGATGTGATTGCA
LOC_Os03g59750
Os.21886.1.S1_at--970--6311Chr03:33950104..33950128 (25 bp)
GATGCAATTTTTGGGCGGCTCAGCG
LOC_Os03g59750
Os.21886.1.S1_at--3--6571Chr03:33950042..33950066 (25 bp)
GATTCGGACAGAACTCTAGTTGCCA
LOC_Os03g59750
Os.21886.1.S1_at--427--6691Chr03:33950024..33950048 (25 bp)
GTTGCCATTAACTACCTGTGTCTAG
LOC_Os03g59750
Os.21886.1.S1_at--1083--8151Chr03:33949974..33949998 (25 bp)
GGAACCGAACGTGCTCGCAAGGCTA
LOC_Os03g59750
Os.21886.1.S1_at--662--10431Chr03:33949832..33949856 (25 bp)
TTATGATGGCCTTCTGTGTATACCC
LOC_Os03g59750
Os.21886.1.S1_at--237--10191Chr03:33949814..33949838 (25 bp)
TATACCCATTTTGCTGTGATCGATC
LOC_Os03g59750
Os.21886.1.S1_at--648--7391Chr03:33949799..33949823 (25 bp)
GTGATCGATCTTTCTAATTCGCCTT
NONE
Target Sequence 
AAAGATATATCCATCCGGTCTCGTTCCGCAAGGGGAGTCATTCTGATGAGGCTGGAACATGCTGGGAAGATCCAGTCAGC
CTCACTAATATCAGCAGCAGAAGAGGAGGAAGAACAGGACCCGGAGTCAGCCTCACTAATATCAGAAGCANNANNGCCGG
AAAAACAAGACCCGGAGGTNTCAGCTTAGGAGTGGCGANTGCACTCATNTATTGAAGGCCTCGCTGATGTGATTGCAGTT
CGGGGATGCAATTTTTGGGCGGCTCAGCGATCATGCAANATTCATTCCNCGCCGAAGCACNCGGNTGATTCGGACAGAAC
TCTAGTTGCCATTAACTACCTGTGTCTAGCTAGATATGTAGGATTTCCTTGGCAGGAACCGAACGTGCTCGCAAGGCTAC
ATNTGCCATGAGCAGTTGATGCATCCAGCNCCTCATGCGNTANTGNTGGNCTGGTGTGCTTNTTNTGTGTTGAGAACTAC
TGATTNTTGNGCATCCCCCGTTGNGTTAGCNACAGTTTATGATGGCCTTCTGTGTATACCCATTTTGCTGTGATCGATCT
TTCTAATTCGCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21886.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis