Browse Element(s) Details


OsAffx.25773.1.S1_at

Description tigr:9631.m05880
TID=OsAffx.25773.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative No apical meristem (NAM) protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5973010/11No apical meristem protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g59680Os.19299.1.S1_at10/113+33927150..33930840PAPA-1-like conserved region family protein, expressed
LOC_Os03g59690OsAffx.3645.1.S1_x_at11/113+33933259..33934209uncharacterized plant-specific domain TIGR01570 family protein
LOC_Os03g59690OsAffx.22199.2.S1_x_at1/113+33933259..33934209uncharacterized plant-specific domain TIGR01570 family protein
LOC_Os03g59700Os.27981.1.S1_at10/113+33934520..33937603Peptidyl-prolyl cis-trans isomerase H, putative, expressed
LOC_Os03g59710Os.6036.1.S1_s_at11/113+33937742..33938580Pre-mRNA branch site p14, putative, expressed
LOC_Os03g59710Os.5336.1.S1_at11/113+33937742..33938580Pre-mRNA branch site p14, putative, expressed
LOC_Os03g59720Os.27962.1.A1_at11/113+33939999..33941322ribosomal protein L36 containing protein, expressed
LOC_Os03g59730OsAffx.25773.1.S1_at10/113+33941973..33944596No apical meristem protein
LOC_Os03g59740Os.12389.1.S1_x_at11/113+33945831..33948743ADP-ribosylation factor, putative, expressed
LOC_Os03g59740Os.12389.1.S1_at11/113+33945831..33948743ADP-ribosylation factor, putative, expressed
LOC_Os03g59750Os.21886.1.S1_at10/113+33949799..33954576DNA gyrase subunit A, putative, expressed
LOC_Os03g59754NANA3+33965067..33965465hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25773.1.S1_at--108--31Chr03:33943640..33943664 (25 bp)
ATTGGACGTCTGCAAGTTGAACCTA
LOC_Os03g59730
OsAffx.25773.1.S1_at--467--10751Chr03:33943626..33943648 (23 bp)
TTGAACCTAGACGAACTCCATGGAG
LOC_Os03g59730
OsAffx.25773.1.S1_at--275--9231Chr03:33943515..33943596 (25 bp)
TCCATGGAGATCTTGGCCTCGGGAA
LOC_Os03g59730
OsAffx.25773.1.S1_at--959--6991Chr03:33943394..33943418 (25 bp)
GTACTGGAAGTCTAACAGCGCGGAG
LOC_Os03g59730
OsAffx.25773.1.S1_at--567--8851Chr03:33943341..33943365 (25 bp)
TGATCGGCAGGGTGAACAGCCTCAC
LOC_Os03g59730
OsAffx.25773.1.S1_at--429--5311Chr03:33943268..33943292 (25 bp)
GAAGGAGTATCGCATCCCGCAGTTT
LOC_Os03g59730
OsAffx.25773.1.S1_at--1057--5011Chr03:33943250..33943274 (25 bp)
GCAGTTTCAGATTCCACTTGGCCAA
LOC_Os03g59730
OsAffx.25773.1.S1_at--9--1451NONE
AGAAGATTCAAACCGCCTGCTTACA
NONE
OsAffx.25773.1.S1_at--608--6731Chr03:33942140..33942164 (25 bp)
GTTCTTTTTTACTTTCTGCAGCTGG
LOC_Os03g59730
OsAffx.25773.1.S1_at--409--3911Chr03:33942119..33942143 (25 bp)
CTGGATGAATGGGTGCTCTGTAAAT
LOC_Os03g59730
OsAffx.25773.1.S1_at--855--7031Chr03:33942100..33942124 (25 bp)
GTAAATTGTACCATAGCTTTGCATA
LOC_Os03g59730
Target Sequence 
ATTGGACGTCTGCAAGTTGAACCTAGACGAACTCCATGGAGATCTTGGCCTCGGGAAGAGCTTGGACGGGGCGTGGTACG
TGTTCTCGCCGAGGAGCCGGTACAAGGAGCGCGGCGTCCGGCCGGCGAGGGGGATCAAGACGACGGCGGTGGGGTACTGG
AAGTCTAACAGCGCGGAGGCCGACGTCGTCGACGACGACGGCGAGGTGATCGGCAGGGTGAACAGCCTCACGCTCGCGCT
CGGCCATCAGCCGAGAGGGAAGGCGACGCACTGGAGGATGAAGGAGTATCGCATCCCGCAGTTTCAGATTCCACTTGGCC
AAGAAGATTCAAACCGCCTGCTTACACCCATGCTCTCTCAAGACATTGTTCTTTTTTACTTTCTGCAGCTGGATGAATGG
GTGCTCTGTAAATTGTACCATAGCTTTGCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25773.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis