Browse Element(s) Details


Os.27962.1.A1_at

Description gb:AK063320.1
DB_XREF= gi:32973338
TID=Os.27962.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.27962 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-113-H01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-113-H01, full insert sequence.
FL= gb:AK063320.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5972011/11ribosomal protein L36 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g59680Os.19299.1.S1_at10/113+33927150..33930840PAPA-1-like conserved region family protein, expressed
LOC_Os03g59690OsAffx.3645.1.S1_x_at11/113+33933259..33934209uncharacterized plant-specific domain TIGR01570 family protein
LOC_Os03g59690OsAffx.22199.2.S1_x_at1/113+33933259..33934209uncharacterized plant-specific domain TIGR01570 family protein
LOC_Os03g59700Os.27981.1.S1_at10/113+33934520..33937603Peptidyl-prolyl cis-trans isomerase H, putative, expressed
LOC_Os03g59710Os.6036.1.S1_s_at11/113+33937742..33938580Pre-mRNA branch site p14, putative, expressed
LOC_Os03g59710Os.5336.1.S1_at11/113+33937742..33938580Pre-mRNA branch site p14, putative, expressed
LOC_Os03g59720Os.27962.1.A1_at11/113+33939999..33941322ribosomal protein L36 containing protein, expressed
LOC_Os03g59730OsAffx.25773.1.S1_at10/113+33941973..33944596No apical meristem protein
LOC_Os03g59740Os.12389.1.S1_x_at11/113+33945831..33948743ADP-ribosylation factor, putative, expressed
LOC_Os03g59740Os.12389.1.S1_at11/113+33945831..33948743ADP-ribosylation factor, putative, expressed
LOC_Os03g59750Os.21886.1.S1_at10/113+33949799..33954576DNA gyrase subunit A, putative, expressed
LOC_Os03g59754NANA3+33965067..33965465hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007046biological_processribosome biogenesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27962.1.A1_at--962--4791Chr03:33941268..33941292 (25 bp)
GCTCGAATCGAATCGGTGACGGCGA
LOC_Os03g59720
Os.27962.1.A1_at--1001--491Chr03:33941135..33941159 (25 bp)
ATCGTGTTCATCCAGTGCAAGGCCA
LOC_Os03g59720
Os.27962.1.A1_at--729--871Chr03:33940222..33940245 (24 bp)
AGGCCTCGAAGGTTGCTAAGCAAGA
LOC_Os03g59720
Os.27962.1.A1_at--762--5171Chr03:33940203..33940227 (25 bp)
GCAAGAGCCGTCTATGAAGTTTAAT
LOC_Os03g59720
Os.27962.1.A1_at--712--10451Chr03:33940183..33940207 (25 bp)
TTAATTGGCCTCTGGGTTTAGCTGC
LOC_Os03g59720
Os.27962.1.A1_at--797--9091Chr03:33940161..33940185 (25 bp)
TGCTCTGCTCAAGAACAGCGATAAA
LOC_Os03g59720
Os.27962.1.A1_at--462--9771Chr03:33940136..33940160 (25 bp)
TAATGTATCTGCTATTTCTGCATGA
LOC_Os03g59720
Os.27962.1.A1_at--409--4991Chr03:33940117..33940141 (25 bp)
GCATGAATCCTAGCTTCTTGATATT
LOC_Os03g59720
Os.27962.1.A1_at--576--7431Chr03:33940048..33940072 (25 bp)
GTGTATCTGCAGTCATCAGCTGAAC
LOC_Os03g59720
Os.27962.1.A1_at--247--9671Chr03:33940033..33940057 (25 bp)
TCAGCTGAACTGATCTTGTGATGGA
LOC_Os03g59720
Os.27962.1.A1_at--1156--6231Chr03:33940014..33940038 (25 bp)
GATGGAATAACACATACCTACACTT
LOC_Os03g59720
Target Sequence 
GCTCGAATCGAATCGGTGACGGCGAGAGGAGGGAGGAGGAGGAGGCGACGGGAGGAGGAAGAAGAAGAAGATGAAGGTTC
GCGCGTCGGTGAAGCGGCTGTGCGCGTACTGCAAGGTGGTGAAGCGCAGGGGCATCGTGTTCATCCAGTGCAAGGCCAAC
GCCAAGCACAAGCAGCGCCAGGGCTTCTCCACGCTCGCCGAGGCCGCCGCCGCCTGCCACCCCCCACCTCCGCCGCTGCT
CACCAACACATCCCCGGCTGTCGCCGCCGCCGTTGCGGAGGCCTCGAAGGTTGCTAAGCAAGAGCCGTCTATGAAGTTTA
ATTGGCCTCTGGGTTTAGCTGCTCTGCTCAAGAACAGCGATAAATAATGTATCTGCTATTTCTGCATGAATCCTAGCTTC
TTGATATTTTGGTACTANGTGTAAGATTTTAGTTAAAGAACCAACAAAGTTTGTGTATCTGCAGTCATCAGCTGAACTGA
TCTTGTGATGGAATAACACATACCTACACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27962.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis