Browse Element(s) Details


Os.12389.1.S1_at

Description gb:AK122007.1
DB_XREF= gi:37991630
TID=Os.12389.1
CNT=74
FEA=FLmRNA
TIER=FL+Stack
STK=31
UG=Os.12389 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-127-E03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033111C09, full insert sequence.
FL= gb:AK105508.1 gb:AK122007.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5974011/11ADP-ribosylation factor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g59680Os.19299.1.S1_at10/113+33927150..33930840PAPA-1-like conserved region family protein, expressed
LOC_Os03g59690OsAffx.3645.1.S1_x_at11/113+33933259..33934209uncharacterized plant-specific domain TIGR01570 family protein
LOC_Os03g59690OsAffx.22199.2.S1_x_at1/113+33933259..33934209uncharacterized plant-specific domain TIGR01570 family protein
LOC_Os03g59700Os.27981.1.S1_at10/113+33934520..33937603Peptidyl-prolyl cis-trans isomerase H, putative, expressed
LOC_Os03g59710Os.6036.1.S1_s_at11/113+33937742..33938580Pre-mRNA branch site p14, putative, expressed
LOC_Os03g59710Os.5336.1.S1_at11/113+33937742..33938580Pre-mRNA branch site p14, putative, expressed
LOC_Os03g59720Os.27962.1.A1_at11/113+33939999..33941322ribosomal protein L36 containing protein, expressed
LOC_Os03g59730OsAffx.25773.1.S1_at10/113+33941973..33944596No apical meristem protein
LOC_Os03g59740Os.12389.1.S1_x_at11/113+33945831..33948743ADP-ribosylation factor, putative, expressed
LOC_Os03g59740Os.12389.1.S1_at11/113+33945831..33948743ADP-ribosylation factor, putative, expressed
LOC_Os03g59750Os.21886.1.S1_at10/113+33949799..33954576DNA gyrase subunit A, putative, expressed
LOC_Os03g59754NANA3+33965067..33965465hypothetical protein
LOC_Os03g59760Os.14544.1.S1_at11/113+33970386..33972964Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006499biological_processN-terminal protein myristoylation
GO:0005798cellular_componentGolgi-associated vesicle
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12389.1.S1_at--559--8811Chr03:33947506..33947530 (25 bp)
TGATAGGGACCGTGTTGTCGAAGCC
LOC_Os03g59740
Os.12389.1.S1_at--407--6131Chr03:33947507..33947531 (25 bp)
GATAGGGACCGTGTTGTCGAAGCCA
LOC_Os03g59740
Os.12389.1.S1_at--246--291Chr03:33947508..33947532 (25 bp)
ATAGGGACCGTGTTGTCGAAGCCAG
LOC_Os03g59740
Os.12389.1.S1_at--81--1791Chr03:33947514..33947538 (25 bp)
ACCGTGTTGTCGAAGCCAGGGATGA
LOC_Os03g59740
Os.12389.1.S1_at--940--8691Chr03:33947831..33947855 (25 bp)
TGTGCTGCTTGTCTTTGCTAACAAG
LOC_Os03g59740
Os.12389.1.S1_at--775--7311Chr03:33947832..33947856 (25 bp)
GTGCTGCTTGTCTTTGCTAACAAGC
LOC_Os03g59740
Os.12389.1.S1_at--743--3311Chr03:33948135..33948159 (25 bp)
CACTTGTGCTACAACAGGTGAGGGA
LOC_Os03g59740
Os.12389.1.S1_at--554--3611Chr03:33948137..33948161 (25 bp)
CTTGTGCTACAACAGGTGAGGGATT
LOC_Os03g59740
Os.12389.1.S1_at--354--8691Chr03:33948139..33948163 (25 bp)
TGTGCTACAACAGGTGAGGGATTGT
LOC_Os03g59740
Os.12389.1.S1_at--428--3731Chr03:33948143..33948167 (25 bp)
CTACAACAGGTGAGGGATTGTACGA
LOC_Os03g59740
Os.12389.1.S1_at--433--3151Chr03:33948427..33948451 (25 bp)
AATTCCGGAGCTCAATAGTTATTGA
LOC_Os03g59740
Target Sequence 
TGATAGGGACCGTGTTGTCGAAGCCAGGGATGAGCTCCACAGGATGCTGAACGAGGATGAGCTACGTGATGCTGTGCTGC
TTGTCTTTGCTAACAAGCAAGATCTGCCAAACGCTATGAATGCTGCTGAGATCACTGATAAGCTTGGACTGCACTCCCTT
CGCCAGCGACACTGGTATATCCAGAGCACTTGTGCTACAACAGGTGAGGGATTGTACGAGGGCCTGGACTGGCTGTCCAG
CAACATTGCCAGCAAGGCCTAAATTTTAACAAGATTTGCATAAGCTAGGGGAGCTTTGGATGGATCGATGGGTATTTAGG
GCTGTGGTTGCTATCCCAATATGTAAGGTGTAATTCCGGAGCTCAATAGTTATTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12389.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis