Browse Element(s) Details


OsAffx.3645.1.S1_x_at

Description tigr:9631.m05876
TID=OsAffx.3645.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5969011/11uncharacterized plant-specific domain TIGR01570 family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g59660Os.53298.1.S1_at11/113+33908054..33910453Adapter-related protein complex 1 sigma 1B subunit, putative, expressed
LOC_Os03g59670OsAffx.13553.1.S1_at11/113+33912599..33914507Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g59680Os.19299.1.S1_at10/113+33927150..33930840PAPA-1-like conserved region family protein, expressed
LOC_Os03g59690OsAffx.3645.1.S1_x_at11/113+33933259..33934209uncharacterized plant-specific domain TIGR01570 family protein
LOC_Os03g59690OsAffx.22199.2.S1_x_at1/113+33933259..33934209uncharacterized plant-specific domain TIGR01570 family protein
LOC_Os03g59700Os.27981.1.S1_at10/113+33934520..33937603Peptidyl-prolyl cis-trans isomerase H, putative, expressed
LOC_Os03g59710Os.6036.1.S1_s_at11/113+33937742..33938580Pre-mRNA branch site p14, putative, expressed
LOC_Os03g59710Os.5336.1.S1_at11/113+33937742..33938580Pre-mRNA branch site p14, putative, expressed
LOC_Os03g59720Os.27962.1.A1_at11/113+33939999..33941322ribosomal protein L36 containing protein, expressed
LOC_Os03g59730OsAffx.25773.1.S1_at10/113+33941973..33944596No apical meristem protein
LOC_Os03g59740Os.12389.1.S1_x_at11/113+33945831..33948743ADP-ribosylation factor, putative, expressed
LOC_Os03g59740Os.12389.1.S1_at11/113+33945831..33948743ADP-ribosylation factor, putative, expressed
LOC_Os03g59750Os.21886.1.S1_at10/113+33949799..33954576DNA gyrase subunit A, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3645.1.S1_x_at--195--2211Chr03:33933818..33933842 (25 bp)
ACAACAGGCCGCACGACGGGCACGC
LOC_Os03g59690
OsAffx.3645.1.S1_x_at--365--1611Chr03:33933668..33933692 (25 bp)
AGCTGATGCAGGAGATCTCCACCGG
LOC_Os03g59690
OsAffx.3645.1.S1_x_at--1162--6311Chr03:33933664..33933688 (25 bp)
GATGCAGGAGATCTCCACCGGCGGC
LOC_Os03g59690
OsAffx.3645.1.S1_x_at--1012--7591Chr03:33933639..33933663 (25 bp)
GGGCACGTCCGCGTCGCGCTGGAGT
LOC_Os03g59690
OsAffx.3645.1.S1_x_at--152--4131Chr03:33933623..33933647 (25 bp)
CGCTGGAGTGCGAGAAGAGGCCCAA
LOC_Os03g59690
OsAffx.3645.1.S1_x_at--1114--891Chr03:33933572..33933596 (25 bp)
AGGCGAGCGTGAGCCTCCTGGAGGA
LOC_Os03g59690
OsAffx.3645.1.S1_x_at--707--6151Chr03:33933552..33933576 (25 bp)
GAGGAGGCCATGTGGACGGCGTACG
LOC_Os03g59690
OsAffx.3645.1.S1_x_at--975--5831Chr03:33933477..33933501 (25 bp)
GACCTCGCCGTGATGCAGCTGCTGA
LOC_Os03g59690
OsAffx.3645.1.S1_x_at--890--7671Chr03:33933357..33933381 (25 bp)
GGGTTCGACAGGGTCGCCGGGAGCA
LOC_Os03g59690
OsAffx.3645.1.S1_x_at--423--5151Chr03:33933335..33933359 (25 bp)
GCAAGGACTCGGAGTCGTTCTACAT
LOC_Os03g59690
OsAffx.3645.1.S1_x_at--958--5711Chr03:33933330..33933354 (25 bp)
GACTCGGAGTCGTTCTACATGGTCA
LOC_Os03g59690
Target Sequence 
ACAACAGGCCGCACGACGGGCACGCCGGCGGCGGGGCGCGCGTGACGGGGACGTTCTACGGCCACCGGCGCGCGCGCATC
ACCCTCGCCGTCCAGGAGCGGCCCGGCAGCCTCCCGTCCCTCGTGCTCGAGCTCGGCGTGCCGACGGCGAAGCTGATGCA
GGAGATCTCCACCGGCGGCGGGCACGTCCGCGTCGCGCTGGAGTGCGAGAAGAGGCCCAAGAAGTTGCCGTCGGCGCCGC
CGGAGCAGGCGAGCGTGAGCCTCCTGGAGGAGGCCATGTGGACGGCGTACGTGAACGGGCGGCGCGTCGGGTACGCGGTG
AGGCGGGAGGCGTCGGAGGGCGACCTCGCCGTGATGCAGCTGCTGAGCACGGTGTCGGTCGGCGCCGGCGTGCTGCCCGG
GGACGTGCTGGCCGAGCCGGCCGGGGCGGAGGGAGACGGCGAGGTGACGTACATGCGCGCCGGGTTCGACAGGGTCGCCG
GGAGCAAGGACTCGGAGTCGTTCTACATGGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3645.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis