Browse Element(s) Details


OsAffx.13553.1.S1_at

Description tigr:9631.m05874
TID=OsAffx.13553.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative DNA binding protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5967011/11Helix-loop-helix DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g59630NANA3+33891231..33892098hypothetical protein
LOC_Os03g59640Os.14194.1.S1_at10/113+33894227..33900896magnesium chelatase ATPase subunit D family protein, expressed
LOC_Os03g59650Os.52838.1.S1_at11/113+33901307..33906998BRCA1 C Terminus domain containing protein, expressed
LOC_Os03g59660Os.53298.1.S1_at11/113+33908054..33910453Adapter-related protein complex 1 sigma 1B subunit, putative, expressed
LOC_Os03g59670OsAffx.13553.1.S1_at11/113+33912599..33914507Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g59680Os.19299.1.S1_at10/113+33927150..33930840PAPA-1-like conserved region family protein, expressed
LOC_Os03g59690OsAffx.3645.1.S1_x_at11/113+33933259..33934209uncharacterized plant-specific domain TIGR01570 family protein
LOC_Os03g59690OsAffx.22199.2.S1_x_at1/113+33933259..33934209uncharacterized plant-specific domain TIGR01570 family protein
LOC_Os03g59700Os.27981.1.S1_at10/113+33934520..33937603Peptidyl-prolyl cis-trans isomerase H, putative, expressed
LOC_Os03g59710Os.6036.1.S1_s_at11/113+33937742..33938580Pre-mRNA branch site p14, putative, expressed
LOC_Os03g59710Os.5336.1.S1_at11/113+33937742..33938580Pre-mRNA branch site p14, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13553.1.S1_at--134--7211Chr03:33914092..33914116 (25 bp)
GTCGTCTCCGACATGAACATGCAAG
LOC_Os03g59670
OsAffx.13553.1.S1_at--839--5491Chr03:33914106..33914130 (25 bp)
GAACATGCAAGCTGCAGCCTAGCCG
LOC_Os03g59670
OsAffx.13553.1.S1_at--1143--3931Chr03:33914129..33914153 (25 bp)
CGGCGGCCATAGCTCAACATAGCTA
LOC_Os03g59670
OsAffx.13553.1.S1_at--817--291Chr03:33914147..33914171 (25 bp)
ATAGCTATCAGTTTGCTTGGTATAC
LOC_Os03g59670
OsAffx.13553.1.S1_at--1034--10171Chr03:33914172..33914196 (25 bp)
TATACTACGTATTTTGCTTGCCATG
LOC_Os03g59670
OsAffx.13553.1.S1_at--331--10271Chr03:33914184..33914208 (25 bp)
TTTGCTTGCCATGTTTTACTTAGTT
LOC_Os03g59670
OsAffx.13553.1.S1_at--1100--3131Chr03:33914219..33914243 (25 bp)
AATTAGTTGCCATCTCCATATATAT
LOC_Os03g59670
OsAffx.13553.1.S1_at--953--10191Chr03:33914237..33914261 (25 bp)
TATATATATGGCTCTTCATGGTGAT
LOC_Os03g59670
OsAffx.13553.1.S1_at--1035--1051Chr03:33914318..33914342 (25 bp)
AGGGTTTGCTTGAGCTTTCACCAAA
LOC_Os03g59670
OsAffx.13553.1.S1_at--245--2691Chr03:33914342..33914366 (25 bp)
AAGCTGTTCCAAAGCCAATGCAAAC
LOC_Os03g59670
OsAffx.13553.1.S1_at--882--5231Chr03:33914376..33914400 (25 bp)
GAATAACAATGTCAGCATCCCCAAT
LOC_Os03g59670
Target Sequence 
GTCGTCTCCGACATGAACATGCAAGCTGCAGCCTAGCCGGCGGCCATAGCTCAACATAGCTATCAGTTTGCTTGGTATAC
TATACTACGTATTTTGCTTGCCATGTTTTACTTAGTTTTTGTGTGCTAATTAGTTGCCATCTCCATATATATATGGCTCT
TCATGGTGATACCAATATTGCCAATTGATATGCCATATATGATTAAGTAGGATATATATTACCATTAGGGTTTGCTTGAG
CTTTCACCAAAAGCTGTTCCAAAGCCAATGCAAACCCAGCCACTGAATAACAATGTCAGCATCCCCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13553.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis