Browse Element(s) Details


Os.50213.1.S1_at

Description gb:AK120133.1
DB_XREF= gi:37989756
TID=Os.50213.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50213 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013027B11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013027B11, full insert sequence.
FL= gb:AK120133.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1573011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g15700Os.19036.1.S1_at11/116+8890134..8902219expressed protein
LOC_Os06g15710NANA6+8903525..8903881retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g15720NANA6+8908222..8908679retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g15730Os.50213.1.S1_at11/116+8912932..8916865expressed protein
LOC_Os06g15740OsAffx.4847.1.S1_at10/116+8924129..8929445hypothetical protein
LOC_Os06g15750OsAffx.15443.1.S1_at11/116+8934093..8938019NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50213.1.S1_at--1004--2151Chr06:8913553..8913577 (25 bp)
ACAGCGGCATAGTGGTGGTGCTCCA
LOC_Os06g15730
Os.50213.1.S1_at--152--9231Chr06:8913532..8913556 (25 bp)
TCCAGTTGTCCTCTGAAGCTCTAGG
LOC_Os06g15730
Os.50213.1.S1_at--175--9531Chr06:8913513..8913537 (25 bp)
TCTAGGACTTTTCGTTTGCTGTTGC
LOC_Os06g15730
Os.50213.1.S1_at--481--8811Chr06:8913494..8913518 (25 bp)
TGTTGCTGCGATGCCGGTGATCAAG
LOC_Os06g15730
Os.50213.1.S1_at--715--6511Chr06:8913469..8913493 (25 bp)
GATATTGCCGATGCGTAGTGGTATT
LOC_Os06g15730
Os.50213.1.S1_at--599--2711Chr06:8913250..8913274 (25 bp)
AAGCAGCTTTGGCACTTGCTGGAAC
LOC_Os06g15730
Os.50213.1.S1_at--140--9131Chr06:8913234..8913258 (25 bp)
TGCTGGAACATGTCAATCTGGGTAC
LOC_Os06g15730
Os.50213.1.S1_at--457--851Chr06:8913102..8913126 (25 bp)
ATGGCGGACCGTTTTTAGACATGGA
LOC_Os06g15730
Os.50213.1.S1_at--850--5231Chr06:8913012..8913036 (25 bp)
GAATAATAGTTCTAGCTGTGCTCCT
LOC_Os06g15730
Os.50213.1.S1_at--423--4731Chr06:8912998..8913022 (25 bp)
GCTGTGCTCCTTCTCATGAAATTAT
LOC_Os06g15730
Os.50213.1.S1_at--1100--5691Chr06:8912956..8912980 (25 bp)
GACTACCGTTGTTGATTTTCTGGAT
LOC_Os06g15730
Target Sequence 
ACAGCGGCATAGTGGTGGTGCTCCAGTTGTCCTCTGAAGCTCTAGGACTTTTCGTTTGCTGTTGCTGCGATGCCGGTGAT
CAAGGATATTGCCGATGCGTAGTGGTATTACATAAGTTGTACGCTGAAGTGTGTTGATAGGAGGATGACACTCTGATTGG
AGTAGATCTGGCATCCAAGAGTACAAAAGACATTCAAGCAGCTTTGGCACTTGCTGGAACATGTCAATCTGGGTACACTG
GTGGAGAAACCATCTTTGGTCCGTCGGCCGAAATCCACAATAGTTCCGGTTCCACTAAAAACCGAGACTAAAGATGATCT
TTAGTATGAAGCTAGAGCTGGAAATGGCGGACCGTTTTTAGACATGGAAATTTCACTCAAGAAGTTGTCCAAGCAGGAAA
AGGAGACCAATGACATTAGAAATTGGTTCATAGGAATAATAGTTCTAGCTGTGCTCCTTCTCATGAAATTATTTGATAAT
ATGTACTATGACTACCGTTGTTGATTTTCTGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50213.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis