Browse Element(s) Details


OsAffx.15443.1.S1_at

Description tigr:9634.m01581
TID=OsAffx.15443.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1575011/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g15730Os.50213.1.S1_at11/116+8912932..8916865expressed protein
LOC_Os06g15740OsAffx.4847.1.S1_at10/116+8924129..8929445hypothetical protein
LOC_Os06g15750OsAffx.15443.1.S1_at11/116+8934093..8938019NB-ARC domain containing protein
LOC_Os06g15760Os.11631.1.S1_at11/116+8954692..8958656Eukaryotic aspartyl protease family protein, expressed
LOC_Os06g15779Os.50340.1.S1_at11/116+8959008..8963690expressed protein
LOC_Os06g15779Os.50340.2.S1_x_at10/116+8959008..8963690expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15443.1.S1_at--920--4571Chr06:8935132..8935156 (25 bp)
GCGCTGCAAATTGGTGTGTCCGCAA
LOC_Os06g15750
OsAffx.15443.1.S1_at--873--5711Chr06:8935079..8935103 (25 bp)
GACTCTCTATTGTGAATTGCCGTAA
LOC_Os06g15750
OsAffx.15443.1.S1_at--232--5211Chr06:8935066..8935090 (25 bp)
GAATTGCCGTAAGCTTGATTTCCCG
LOC_Os06g15750
OsAffx.15443.1.S1_at--812--2091Chr06:8935013..8935037 (25 bp)
ACATCCTGCATTTTCGTGCCTGTAA
LOC_Os06g15750
OsAffx.15443.1.S1_at--410--7291Chr06:8934998..8935022 (25 bp)
GTGCCTGTAACAACATGGAGTCCAT
LOC_Os06g15750
OsAffx.15443.1.S1_at--256--4131Chr06:8934971..8934995 (25 bp)
CGCTAGGCACAAATCTTCGGGTCAA
LOC_Os06g15750
OsAffx.15443.1.S1_at--86--3031Chr06:8934947..8934971 (25 bp)
AATGCCTGATTCTCAAGTCGTGCTC
LOC_Os06g15750
OsAffx.15443.1.S1_at--686--1031Chr06:8934878..8934902 (25 bp)
AGGTCGTGAGCATATCGGACGGCCC
LOC_Os06g15750
OsAffx.15443.1.S1_at--399--8071Chr06:8934862..8934886 (25 bp)
GGACGGCCCGAAGCTGCACGAAGTA
LOC_Os06g15750
OsAffx.15443.1.S1_at--475--7911Chr06:8934293..8934798 (25 bp)
GGTTCCATGTACTACTTGAATCCCC
LOC_Os06g15750
OsAffx.15443.1.S1_at--142--2591Chr06:8934226..8934250 (25 bp)
AACGTGGCAGCGACCGTGATGACGA
LOC_Os06g15750
Target Sequence 
GCGCTGCAAATTGGTGTGTCCGCAAGGAATGGTTTTGCCACCCTCACTCCGACGACTCTCTATTGTGAATTGCCGTAAGC
TTGATTTCCCGGCCTACCTACAGAGCCTCACCTCTCTCGACATCCTGCATTTTCGTGCCTGTAACAACATGGAGTCCATT
CCGCTAGGCACAAATCTTCGGGTCAAATGCCTGATTCTCAAGTCGTGCTCGGAGCTGTCATCCATCGGTGGATCGCGCGC
TCTTTCATCCATGCAGGTCGTGAGCATATCGGACGGCCCGAAGCTGCACGAAGTAGAGCAGCCCTTTACAAAGGGCCTGC
TGACTAAGGAGGAGAAGGTGGAACTGTTGAAATTTACTGGTTCCATGTACTACTTGAATCCCCTCTGTCCGATGAGTGGT
AACGGCGATGGTTGGTCCATGGGCGAACGTGGCAGCGACCGTGATGACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15443.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis