Browse Element(s) Details


Os.50364.1.S1_at

Description gb:AK120886.1
DB_XREF= gi:37990509
TID=Os.50364.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50364 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023028P22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023028P22, full insert sequence.
FL= gb:AK120886.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1332011/11C4-dicarboxylate transporter/malic acid transport family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g12808NANA5+7336097..7336984uncharacterized plant-specific domain TIGR01568 family protein
LOC_Os05g13300Os.54253.1.S1_at7/115+7346795..7354923Helicase, putative, expressed
LOC_Os05g13300OsAffx.31500.1.S1_at1/115+7346795..7354923Helicase, putative, expressed
LOC_Os05g13300Os.19965.1.S1_at1/115+7346795..7354923Helicase, putative, expressed
LOC_Os05g13320Os.50364.1.S1_at11/115+7358012..7360320C4-dicarboxylate transporter/malic acid transport family protein, putative, expressed
LOC_Os05g13320Os.5608.3.S1_x_at1/115+7358012..7360320C4-dicarboxylate transporter/malic acid transport family protein, putative, expressed
LOC_Os05g13330Os.16585.1.S1_at11/115+7377797..7382612Per1-like family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016021cellular_componentintegral to membrane
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50364.1.S1_at--151--1791Chr05:7358453..7358477 (25 bp)
ACCGAGGTGGACAACGCGCTCACCA
LOC_Os05g13320
Os.50364.1.S1_at--29--391Chr05:7358309..7358333 (25 bp)
ATCACCGACGGCCAGAGCATGATCC
LOC_Os05g13320
Os.50364.1.S1_at--779--5931Chr05:7358295..7358319 (25 bp)
GAGCATGATCCCCATCAAGGAGCTG
LOC_Os05g13320
Os.50364.1.S1_at--40--1871Chr05:7358233..7358257 (25 bp)
ACGACGAGGACATTGAGTCCGCCGC
LOC_Os05g13320
Os.50364.1.S1_at--795--1791Chr05:7358198..7358222 (25 bp)
ACCGCGGCGAGATCTTGAGCTGGAA
LOC_Os05g13320
Os.50364.1.S1_at--86--1311Chr05:7358174..7358198 (25 bp)
AGATGACACGATCGGATTCTTGAAT
LOC_Os05g13320
Os.50364.1.S1_at--616--6571Chr05:7358160..7358184 (25 bp)
GATTCTTGAATTTCTCGGCGGCATT
LOC_Os05g13320
Os.50364.1.S1_at--1100--4931Chr05:7358140..7358164 (25 bp)
GCATTGCCAGAGTGTGGCCCTGATG
LOC_Os05g13320
Os.50364.1.S1_at--4--6671Chr05:7358089..7358113 (25 bp)
GTTGAAACCACATGTATCCTATGAT
LOC_Os05g13320
Os.50364.1.S1_at--76--10411Chr05:7358043..7358067 (25 bp)
TTAGGGCAACAATGTTTTGTACATC
LOC_Os05g13320
Os.50364.1.S1_at--1093--6791Chr05:7358030..7358054 (25 bp)
GTTTTGTACATCAGGACATATATCC
LOC_Os05g13320
Target Sequence 
ACCGAGGTGGACAACGCGCTCACCAGGGCGCTCTGCGTCGCGCTCTCCGCCGTCGCCACGCTCGTCGTCACCGCCCTCTT
CGCCACCACCATGATCCACGCCTTCGTGCTCCACAAGCTCTTCCCCAACGACATCGCCATCGCCATCACCGACGGCCAGA
GCATGATCCCCATCAAGGAGCTGCTCGAGATGCACGCCGACGCCGCCGACGCCGACGCCGACGACGAGGACATTGAGTCC
GCCGCGGCCAAGCCCACCGCGGCGAGATCTTGAGCTGGAAGATGACACGATCGGATTCTTGAATTTCTCGGCGGCATTGC
CAGAGTGTGGCCCTGATGGAGTGAGTTGAGGAGATGAATTCAAAGTTGAAACCACATGTATCCTATGATAATCAAAGTGT
TTTTCTTGAATTAGGGCAACAATGTTTTGTACATCAGGACATATATCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50364.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis