Browse Element(s) Details


Os.50411.1.S1_at

Description gb:AK121102.1
DB_XREF= gi:37990725
TID=Os.50411.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50411 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013052I15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023069N11, full insert sequence.
FL= gb:AK121102.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4575011/11NB-ARC domain containing protein, expressed
LOC_Os07g321501/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g45730Os.6348.1.S1_x_at11/1111+27153663..27155847Pectinesterase family protein, expressed
LOC_Os11g45740Os.2867.1.A1_at11/1111+27163514..27166514expressed protein
LOC_Os11g45750Os.50411.2.S1_x_at11/1111+27176833..27188263NB-ARC domain containing protein, expressed
LOC_Os11g45750Os.50411.1.S1_at11/1111+27176833..27188263NB-ARC domain containing protein, expressed
LOC_Os11g45750Os.50411.2.S1_at10/1111+27176833..27188263NB-ARC domain containing protein, expressed
LOC_Os11g45760OsAffx.31500.1.S1_at11/1111+27184392..27187611NB-ARC domain containing protein, expressed
LOC_Os11g45770OsAffx.19395.1.S1_at11/1111+27188074..27188939hypothetical protein
LOC_Os11g45780OsAffx.19396.1.S1_at11/1111+27194263..27195076RGH2A, putative
LOC_Os11g45790OsAffx.31500.1.S1_at2/1111+27196967..27200406NB-ARC domain containing protein, expressed
LOC_Os11g45800NANA11+27208594..27208860hypothetical protein
LOC_Os11g45810NANA11+27210837..27211571hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50411.1.S1_at--452--5331Chr11:27177295..27177319 (25 bp)
GAAGTGATCAGGTGAGCAGCAGCAT
LOC_Os11g45750
Os.50411.1.S1_at--905--7231Chr11:27177258..27177282 (25 bp)
GTCGCCATCGCCAATTGAGATTTGT
LOC_Os11g45750
Os.50411.1.S1_at--6--491Chr11:27177216..27177240 (25 bp)
ATCTGTTGGTTGTTGGTCTATTGCC
LOC_Os11g45750
Os.50411.1.S1_at--809--7811Chr11:27177202..27177226 (25 bp)
GGTCTATTGCCATCATGCCATGTAC
LOC_Os11g45750
Os.50411.1.S1_at--1000--9192Chr07:19094675..19094699 (25 bp)
TGCCATCATGCCATGTACTGATGAA
LOC_Os07g32150
Os.50411.1.S1_at--361--1971Chr11:27177179..27177203 (25 bp)
ACTGATGAACAGACGTATATATACA
LOC_Os11g45750
Os.50411.1.S1_at--529--651Chr11:27177155..27177179 (25 bp)
ATGCACTACTATGTTCCATGTTAGG
LOC_Os11g45750
Os.50411.1.S1_at--276--6691Chr11:27177143..27177167 (25 bp)
GTTCCATGTTAGGTTAATAGGTTTG
LOC_Os11g45750
Os.50411.1.S1_at--1017--3091Chr11:27177128..27177152 (25 bp)
AATAGGTTTGTGACTTACTGACTTT
LOC_Os11g45750
Os.50411.1.S1_at--900--5691Chr11:27177117..27177141 (25 bp)
GACTTACTGACTTTGTGTCTGTCTC
LOC_Os11g45750
Os.50411.1.S1_at--111--2051Chr11:27177108..27177132 (25 bp)
ACTTTGTGTCTGTCTCTTATTTTTT
LOC_Os11g45750
Target Sequence 
GAAGTGATCAGGTGAGCAGCAGCATGCCAGCAACACCGTCGCCATCGCCAATTGAGATTTGTTTTAATTCTATGATTTTA
TCTGTTGGTTGTTGGTCTATTGCCATCATGCCATGTACTGATGAACAGACGTATATATACATGCACTACTATGTTCCATG
TTAGGTTAATAGGTTTGTGACTTACTGACTTTGTGTCTGTCTCTTATTTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50411.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis