Browse Element(s) Details


Os.2867.1.A1_at

Description gb:AY026332.1
DB_XREF= gi:13177577
TID=Os.2867.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2867 (NCBI UniGene Cluster)
DEF=Oryza sativa Myb transcription factor JAMyb mRNA, complete cds.
PROD=Myb transcription factor JAMyb
FL= gb:AY026332.1 gb:AK069082.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4574011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g45710Os.26441.1.S1_s_at11/1111+27141896..27148422glycosyl hydrolase family 1 protein, putative, expressed
LOC_Os11g45710Os.26441.1.S1_at11/1111+27141896..27148422glycosyl hydrolase family 1 protein, putative, expressed
LOC_Os11g45710Os.26441.2.S1_at11/1111+27141896..27148422glycosyl hydrolase family 1 protein, putative, expressed
LOC_Os11g45720Os.8099.1.S1_at11/1111+27149444..27151602Pectinesterase family protein, expressed
LOC_Os11g45730Os.6348.1.S1_x_at11/1111+27153663..27155847Pectinesterase family protein, expressed
LOC_Os11g45740Os.2867.1.A1_at11/1111+27163514..27166514expressed protein
LOC_Os11g45750Os.50411.2.S1_x_at11/1111+27176833..27188263NB-ARC domain containing protein, expressed
LOC_Os11g45750Os.50411.1.S1_at11/1111+27176833..27188263NB-ARC domain containing protein, expressed
LOC_Os11g45750Os.50411.2.S1_at10/1111+27176833..27188263NB-ARC domain containing protein, expressed
LOC_Os11g45760OsAffx.31500.1.S1_at11/1111+27184392..27187611NB-ARC domain containing protein, expressed
LOC_Os11g45770OsAffx.19395.1.S1_at11/1111+27188074..27188939hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009414biological_processresponse to water deprivation
GO:0009651biological_processresponse to salt stress
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005516molecular_functioncalmodulin binding
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2867.1.A1_at--545--5351Chr11:27164098..27164122 (25 bp)
GAAGATTAACTTACATGTGCATGGT
LOC_Os11g45740
Os.2867.1.A1_at--496--651Chr11:27164043..27164067 (25 bp)
ATGCAGGAGGTGGACCATGAGTTTT
LOC_Os11g45740
Os.2867.1.A1_at--93--3531Chr11:27164028..27164052 (25 bp)
CATGAGTTTTGGTCTACAGAGATTC
LOC_Os11g45740
Os.2867.1.A1_at--589--651Chr11:27163994..27164018 (25 bp)
ATGAACAGTTTCAGGACCAACAGCT
LOC_Os11g45740
Os.2867.1.A1_at--258--8951Chr11:27163958..27163982 (25 bp)
TGCAAGGTTTTTCTGAGGGTTTGTC
LOC_Os11g45740
Os.2867.1.A1_at--438--7691Chr11:27163942..27163966 (25 bp)
GGGTTTGTCCGAAACTCTATGGAGT
LOC_Os11g45740
Os.2867.1.A1_at--855--3871Chr11:27163805..27163829 (25 bp)
CTGTACGTTGAGACACTTAAGTTCT
LOC_Os11g45740
Os.2867.1.A1_at--30--10191Chr11:27163620..27163644 (25 bp)
TATACTCCAGAATTGCACTGAGGAT
LOC_Os11g45740
Os.2867.1.A1_at--696--7931Chr11:27163599..27163623 (25 bp)
GGATTACATATCCAATTCAGACATG
LOC_Os11g45740
Os.2867.1.A1_at--292--131Chr11:27163585..27163609 (25 bp)
ATTCAGACATGCAAACCTTACCAGT
LOC_Os11g45740
Os.2867.1.A1_at--518--2371Chr11:27163573..27163597 (25 bp)
AAACCTTACCAGTTGCAATATTGTA
LOC_Os11g45740
Target Sequence 
GAAGATTAACTTACATGTGCATGGTGATGATGAGAAGATGAACNCTGNAGACTGGATGCAGGAGGTGGACCATGAGTTTT
GGTCTACAGAGATTCAGNCTAATAATGAACAGTTTCAGGACCAACAGCTNAANGGTTGGGTGCAAGGTTTTTCTGAGGGT
TTGTCCGAAACTCTATGGAGTCTAGAGGACATATGGAAGATGCAATAAATTTTACATTTACAAAGGACATATTTGTAAAA
TAGAATNNNNNNAGAGAGACATCAAGGAAGGCAAAGAGAAAAAGTTCTTTNNNNNNNNNNNNNNNAGTCATNTACTGTAC
GTTGAGACACTTAAGTTCTTNGCCAACTTCAATGNTTTTTTTTCTTTTNNNNNNNNNNNNNNNNNNNANNNNNNAANNNN
NTNTTGCCTTCTAGATGTCTAGGGGTTCAAAGAGGACCAGNGGAGATATATATGTGTTTGGATATGTTGATATATGAGCT
GATATATGCCTTACTATATATATACTCCAGAATTGCACTGAGGATTACATATCCAATTCAGACATGCAAACCTTACCAGT
TGCAATATTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2867.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis