Browse Element(s) Details


Os.26441.1.S1_s_at

Description gb:AK067619.1
DB_XREF= gi:32977637
TID=Os.26441.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26441 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) mRNA for putative beta-glycosidase (sfr2 gene)
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013110O12, full insert sequence.
FL= gb:AK067619.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4571011/11glycosyl hydrolase family 1 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g45670Os.47463.1.S1_x_at6/1111+27115009..27118709transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g45670Os.14491.2.S1_x_at4/1111+27115009..27118709transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g45680NANA11+27123274..27126512transposon protein, putative, unclassified
LOC_Os11g45690NANA11+27127158..27133314transposon protein, putative, unclassified
LOC_Os11g45710Os.26441.1.S1_s_at11/1111+27141896..27148422glycosyl hydrolase family 1 protein, putative, expressed
LOC_Os11g45710Os.26441.1.S1_at11/1111+27141896..27148422glycosyl hydrolase family 1 protein, putative, expressed
LOC_Os11g45710Os.26441.2.S1_at11/1111+27141896..27148422glycosyl hydrolase family 1 protein, putative, expressed
LOC_Os11g45720Os.8099.1.S1_at11/1111+27149444..27151602Pectinesterase family protein, expressed
LOC_Os11g45730Os.6348.1.S1_x_at11/1111+27153663..27155847Pectinesterase family protein, expressed
LOC_Os11g45740Os.2867.1.A1_at11/1111+27163514..27166514expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26441.1.S1_s_at--1124--5551Chr11:27144225..27144249 (25 bp)
GAAATGGAAAGTTCAACTTCTTCAG
LOC_Os11g45710
Os.26441.1.S1_s_at--645--4871Chr11:27144021..27144045 (25 bp)
GCTATGTCCTGCACTTCTTAATTGA
LOC_Os11g45710
Os.26441.1.S1_s_at--576--3651Chr11:27144005..27144029 (25 bp)
CTTAATTGAAGATGCTTCCTGGGAA
LOC_Os11g45710
Os.26441.1.S1_s_at--489--10031Chr11:27143990..27144014 (25 bp)
TTCCTGGGAAGTGTTTGGGTGAACA
LOC_Os11g45710
Os.26441.1.S1_s_at--543--7711Chr11:27143974..27143998 (25 bp)
GGGTGAACAGATGGGCACCTGCCTA
LOC_Os11g45710
Os.26441.1.S1_s_at--35--8651Chr11:27143963..27143987 (25 bp)
TGGGCACCTGCCTACCTTATTTAGA
LOC_Os11g45710
Os.26441.1.S1_s_at--995--911Chr11:27143925..27143949 (25 bp)
AGGCTACATCCAGATCTGTGCGTGT
LOC_Os11g45710
Os.26441.1.S1_s_at--27--9891Chr11:27143921..27143945 (25 bp)
TACATCCAGATCTGTGCGTGTAGAC
LOC_Os11g45710
Os.26441.1.S1_s_at--493--10471Chr11:27143893..27143917 (25 bp)
TTCAAGTAGTGAGTTAATGGTTCCT
LOC_Os11g45710
Os.26441.1.S1_s_at--277--6771Chr11:27143881..27143905 (25 bp)
GTTAATGGTTCCTATTGTTTCCTCA
LOC_Os11g45710
Os.26441.1.S1_s_at--349--7911Chr11:27143875..27143899 (25 bp)
GGTTCCTATTGTTTCCTCATATAGA
LOC_Os11g45710
Target Sequence 
GAAATGGAAAGTTCAACTTCTTCAGCTATGTCCTGCACTTCTTAATTGAAGATGCTTCCTGGGAAGTGTTTGGGTGAACA
GATGGGCACCTGCCTACCTTATTTAGATCTCTGACCCTCCAGGCTACATCCAGATCTGTGCGTGTAGACACGTTCAAGTA
GTGAGTTAATGGTTCCTATTGTTTCCTCATATAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26441.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis