Browse Element(s) Details


Os.8099.1.S1_at

Description gb:AK072863.1
DB_XREF= gi:32982886
TID=Os.8099.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8099 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023006A20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023143K08, full insert sequence.
FL= gb:AK072863.1 gb:AK100113.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4572011/11Pectinesterase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g45680NANA11+27123274..27126512transposon protein, putative, unclassified
LOC_Os11g45690NANA11+27127158..27133314transposon protein, putative, unclassified
LOC_Os11g45710Os.26441.1.S1_s_at11/1111+27141896..27148422glycosyl hydrolase family 1 protein, putative, expressed
LOC_Os11g45710Os.26441.1.S1_at11/1111+27141896..27148422glycosyl hydrolase family 1 protein, putative, expressed
LOC_Os11g45710Os.26441.2.S1_at11/1111+27141896..27148422glycosyl hydrolase family 1 protein, putative, expressed
LOC_Os11g45720Os.8099.1.S1_at11/1111+27149444..27151602Pectinesterase family protein, expressed
LOC_Os11g45730Os.6348.1.S1_x_at11/1111+27153663..27155847Pectinesterase family protein, expressed
LOC_Os11g45740Os.2867.1.A1_at11/1111+27163514..27166514expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005618cellular_componentcell wall
GO:0005737cellular_componentcytoplasm
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0030599molecular_functionpectinesterase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8099.1.S1_at--851--4971Chr11:27149977..27150001 (25 bp)
GCATCGGCGATACCCAGGAACTCAA
LOC_Os11g45720
Os.8099.1.S1_at--412--5731Chr11:27149855..27149879 (25 bp)
GACGGCGAGTAGTTCAAACCCACCT
LOC_Os11g45720
Os.8099.1.S1_at--993--1751Chr11:27149834..27149858 (25 bp)
ACCTGCCACGAAGAGTTACTCGGGT
LOC_Os11g45720
Os.8099.1.S1_at--615--7311Chr11:27149793..27149817 (25 bp)
GTGCTTCAAGCACACCGGCAAAGGC
LOC_Os11g45720
Os.8099.1.S1_at--568--4671Chr11:27149745..27149769 (25 bp)
GCGGTGAGTCACAACTTCATCTACG
LOC_Os11g45720
Os.8099.1.S1_at--1037--9511Chr11:27149726..27149750 (25 bp)
TCTACGGCAATTGAAGGATCCTCCC
LOC_Os11g45720
Os.8099.1.S1_at--1028--3151Chr11:27149656..27149680 (25 bp)
AATTGGGCCCAATCAATTCTGTTTT
LOC_Os11g45720
Os.8099.1.S1_at--714--891Chr11:27149629..27149653 (25 bp)
AGGCCCGTTTGTTCTTTGTGTTGTG
LOC_Os11g45720
Os.8099.1.S1_at--870--10831Chr11:27149614..27149638 (25 bp)
TTGTGTTGTGTTAATTGGGCCGGAT
LOC_Os11g45720
Os.8099.1.S1_at--1067--7791Chr11:27149588..27149612 (25 bp)
GGTCGGCCGGCCACATAGATGTGTA
LOC_Os11g45720
Os.8099.1.S1_at--384--10251Chr11:27149536..27149560 (25 bp)
TTTGGTCTTCTATCAGTGTACGCAC
LOC_Os11g45720
Target Sequence 
GCATCGGCGATACCCAGGAACTCAACTGCACCGGCGACGGCAACGGAAAGTAACTCAACTGCACCGGCGACACCCAGCAA
CTCAACTGCACCGGTGACGGCAAGTAATTCAACTGCACCGGCGACGGCGAGTAGTTCAAACCCACCTGCCACGAAGAGTT
ACTCGGGTCCACCGGCGACGCCAAGTGCTTCAAGCACACCGGCAAAGGCGAGTAGATAAGTGCAGCGGCGGCGCGGTGAG
TCACAACTTCATCTACGGCAATTGAAGGATCCTCCCGCCACCAAAGTGATTCAAATATTTCGGAGTAACTATTACCAATT
TAATTGGGCCCAATCAATTCTGTTTTGGAGGCCCGTTTGTTCTTTGTGTTGTGTTAATTGGGCCGGATTGGTCGGCCGGC
CACATAGATGTGTAACATTTGTATTTTTTTCCCAATTCATTTTTGGTCTTCTATCAGTGTACGCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8099.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis