Browse Element(s) Details


Os.26441.2.S1_at

Description gb:AK119461.1
DB_XREF= gi:37989084
TID=Os.26441.2
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.26441 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) mRNA for putative beta-glycosidase (sfr2 gene)
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-133-E10, full insert sequence.
FL= gb:AK119461.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4571011/11glycosyl hydrolase family 1 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g45670Os.47463.1.S1_x_at6/1111+27115009..27118709transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g45670Os.14491.2.S1_x_at4/1111+27115009..27118709transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g45680NANA11+27123274..27126512transposon protein, putative, unclassified
LOC_Os11g45690NANA11+27127158..27133314transposon protein, putative, unclassified
LOC_Os11g45710Os.26441.1.S1_s_at11/1111+27141896..27148422glycosyl hydrolase family 1 protein, putative, expressed
LOC_Os11g45710Os.26441.1.S1_at11/1111+27141896..27148422glycosyl hydrolase family 1 protein, putative, expressed
LOC_Os11g45710Os.26441.2.S1_at11/1111+27141896..27148422glycosyl hydrolase family 1 protein, putative, expressed
LOC_Os11g45720Os.8099.1.S1_at11/1111+27149444..27151602Pectinesterase family protein, expressed
LOC_Os11g45730Os.6348.1.S1_x_at11/1111+27153663..27155847Pectinesterase family protein, expressed
LOC_Os11g45740Os.2867.1.A1_at11/1111+27163514..27166514expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26441.2.S1_at--985--2751Chr11:27142451..27142475 (25 bp)
AAGACATGGTCTATCCTCTTCTTTT
LOC_Os11g45710
Os.26441.2.S1_at--975--2251Chr11:27142413..27142437 (25 bp)
AAATCCAGTTTCCTCAACATAGCCA
LOC_Os11g45710
Os.26441.2.S1_at--335--3331Chr11:27142388..27142412 (25 bp)
CACTCCATTATGTCCTTCAAGGGAA
LOC_Os11g45710
Os.26441.2.S1_at--550--7651Chr11:27142352..27142376 (25 bp)
GGGAGGCCTGCTTCCTTGAGCAAGA
LOC_Os11g45710
Os.26441.2.S1_at--699--5171Chr11:27142333..27142357 (25 bp)
GCAAGAGCCTTGTGCATTGTTGACA
LOC_Os11g45710
Os.26441.2.S1_at--1119--4431Chr11:27142283..27142307 (25 bp)
GCCTTGGCCTTGATTTCATCAGCAA
LOC_Os11g45710
Os.26441.2.S1_at--542--1691Chr11:27142251..27142275 (25 bp)
AGCCATCTTCTATGTATCTCTTCTT
LOC_Os11g45710
Os.26441.2.S1_at--1080--911Chr11:27142213..27142237 (25 bp)
AGGCAGTTTTTGGAGGCTTGGCTTT
LOC_Os11g45710
Os.26441.2.S1_at--330--6211Chr11:27142201..27142225 (25 bp)
GAGGCTTGGCTTTGTATGGTATTAT
LOC_Os11g45710
Os.26441.2.S1_at--700--3571Chr11:27142104..27142128 (25 bp)
CATAGGATTTTCCATCTTGCCATTG
LOC_Os11g45710
Os.26441.2.S1_at--575--7771Chr11:27142034..27142058 (25 bp)
GGTCCTCTGGCTGAGAGTACTTTTG
LOC_Os11g45710
Target Sequence 
AAGACATGGTCTATCCTCTTCTTTTGCTTGAGCCACACAAATCCAGTTTCCTCAACATAGCCACACTCCATTATGTCCTT
CAAGGGAAGAAGGCCATTTGGGAGGCCTGCTTCCTTGAGCAAGAGCCTTGTGCATTGTTGACAGATCTCATCATCATAGT
AGNCCTCCGCCTTGGCCTTGATTTCATCAGCAATAACAAGAGCCATCTTCTATGTATCTCTTCTTTTTTTCAGCTCTGAG
GCAGTTTTTGGAGGCTTGGCTTTGTATGGTATTATGGTTGTGTTGTTCATAGNGAAACTTGGCTACCTTTATATAGGAAA
TGCCTTGTCAAATNGTGCCTTAACATGCATAGGATTTTCCATCTTGCCATTGTCAGTTAAGGATGGACAATATATCATGC
TCATATAAAANCTGTAGGGTCCTCTGGCTGAGAGTACTTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26441.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis