Browse Element(s) Details


Os.50424.1.S1_at

Description gb:AK102424.1
DB_XREF= gi:32987633
TID=Os.50424.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50424 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033093E21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033093E21, full insert sequence.
FL= gb:AK102424.1 gb:AK121153.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0104010/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g01010OsAffx.30850.1.S1_at1/118+261..2244NA
LOC_Os08g01020OsAffx.5673.1.S1_at11/118+3839..7735hypothetical protein
LOC_Os08g01030OsAffx.28968.1.S1_at11/118+12574..17853ZIP Zinc transporter family protein, expressed
LOC_Os08g01030OsAffx.28968.1.S1_s_at10/118+12574..17853ZIP Zinc transporter family protein, expressed
LOC_Os08g01040Os.50424.1.S2_at11/118+19941..27167Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g01040Os.50424.1.S1_at10/118+19941..27167Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g01054Os.17519.1.S1_at11/118+29798..39772transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g01054Os.17519.2.S1_at10/118+29798..39772transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g01070Os.6337.1.S1_at11/118+47929..51980expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50424.1.S1_at--16--8491Chr08:26424..26448 (25 bp)
TGGAAACTCGTCTCGACCGAAGGTT
LOC_Os08g01040
Os.50424.1.S1_at--100--1171Chr08:26378..26402 (25 bp)
AGTCATTGCGCTACATACCGTTGAA
LOC_Os08g01040
Os.50424.1.S1_at--910--2671NONE
AAGCTTCCTTGATGGTGGTACTTCT
NONE
Os.50424.1.S1_at--769--7011Chr08:25785..25809 (25 bp)
GTACTTCTTGATGTGATGCTTGCTT
LOC_Os08g01040
Os.50424.1.S1_at--1028--7571Chr08:25731..25755 (25 bp)
GGGCGGATAATCCTATTCTGCACAT
LOC_Os08g01040
Os.50424.1.S1_at--419--7711Chr08:25615..25639 (25 bp)
GGGTGTACTTTTCACTGGGTTTCAT
LOC_Os08g01040
Os.50424.1.S1_at--858--6831Chr08:25597..25621 (25 bp)
GTTTCATACTTTCGACCAGTACTCG
LOC_Os08g01040
Os.50424.1.S1_at--318--1311Chr08:25466..25490 (25 bp)
AGATGGCATTGTCTTTCTTGCGACT
LOC_Os08g01040
Os.50424.1.S1_at--194--7971Chr08:25430..25454 (25 bp)
GGATCATAAATCTAGTCACCGTTGC
LOC_Os08g01040
Os.50424.1.S1_at--177--7111Chr08:25416..25440 (25 bp)
GTCACCGTTGCCAATATTTCAGTTA
LOC_Os08g01040
Os.50424.1.S1_at--866--7111Chr08:25348..25372 (25 bp)
GTCAGTTGATATCTGTGCTTCACAA
LOC_Os08g01040
Target Sequence 
TGGAAACTCGTCTCGACCGAAGGTTTGGAGGCTTGGATAGTTTGCAAGTCATTGCGCTACATACCGTTGAAGCTTCCTTG
ATGGTGGTACTTCTTGATGTGATGCTTGCTTGTGTTTTTGGTTTTATCCCCTTCTCACTGGGGCGGATAATCCTATTCTG
CACATCGTGCTTCAGTTNNGGAAATATGGATAGAGTCCACTCCTACACTTCAACATCTNCTATCCTTTTAGNTGGATATN
GATTTANCTTTTCACNGGGTGTACTTTTCACTGGGTTTCATACTTTCGACCAGTACTCGAGGGGAGAACACCTCACAATT
GCAGTTTTCTTCAAGGTCTTGACCAATGGAATGTACAGACTATTCAGCCCNCTTAGAAGGTTGCCTGGTATACATGTAAT
GGTCCAGATGGCATTGTCTTTCTTGCGACTGTTCTTCAGNGGGATCATAAATCTAGTCACCGTTGCCAATATTTCAGTTA
ATCTCATTAATGTGATTGCAATATGNCCGTTGTTCTTTGGCTGGTCAGTTGATATCTGTGCTTCACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50424.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis