Browse Element(s) Details


Os.6337.1.S1_at

Description gb:CB644399
DB_XREF= gi:29639390
DB_XREF=OSJNEb05J13.r
CLONE=OSJNEb05J13
TID=Os.6337.1
CNT=7
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.6337 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_189783.1 (A.thaliana) hypothetical protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0107011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g01040Os.50424.1.S2_at11/118+19941..27167Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g01040Os.50424.1.S1_at10/118+19941..27167Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g01054Os.17519.1.S1_at11/118+29798..39772transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g01054Os.17519.2.S1_at10/118+29798..39772transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g01070Os.6337.1.S1_at11/118+47929..51980expressed protein
LOC_Os08g01080Os.46922.1.S1_at10/118+52251..57016expressed protein
LOC_Os08g01090Os.25169.1.S1_at10/118+57228..61492B3 DNA binding domain containing protein, expressed
LOC_Os08g01100Os.5767.1.S1_at11/118+64999..66368HMG box family protein, expressed
LOC_Os08g01110Os.18580.1.S1_at7/118+71957..77877expressed protein
LOC_Os08g01110Os.51348.1.S1_x_at2/118+71957..77877expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6337.1.S1_at--847--571Chr08:51393..51417 (25 bp)
ATCCACATGCACACTTTGGTGGTGG
LOC_Os08g01070
Os.6337.1.S1_at--346--7491Chr08:51411..51435 (25 bp)
GTGGTGGAGGCTTCCTCCCAAGGAA
LOC_Os08g01070
Os.6337.1.S1_at--1096--3791Chr08:51425..51449 (25 bp)
CTCCCAAGGAATCCAGCTGCATCTG
LOC_Os08g01070
Os.6337.1.S1_at--1063--4192Chr08:51496..51520 (25 bp)
CCCGCCAGCGGCAGTTGAAGCACAA
LOC_Os08g01070
Os.6337.1.S1_at--269--1491Chr08:51514..51538 (25 bp)
AGCACAACGGCCGTTTCATGTGTTG
LOC_Os08g01070
Os.6337.1.S1_at--1149--231Chr08:51560..51584 (25 bp)
ATATACGATCCATTTGTGCCGAGTG
LOC_Os08g01070
Os.6337.1.S1_at--468--8691Chr08:51574..51598 (25 bp)
TGTGCCGAGTGGTGCAGTAATGTCA
LOC_Os08g01070
Os.6337.1.S1_at--736--3491Chr08:51667..51691 (25 bp)
CATGGCGTCCGTTGGTGTCAAGTGA
LOC_Os08g01070
Os.6337.1.S1_at--1010--5671Chr08:51690..51714 (25 bp)
GACATATGCACTTTCTTTCTTGAGA
LOC_Os08g01070
Os.6337.1.S1_at--371--5291Chr08:51713..51737 (25 bp)
GAAGAGTTGGGATCTTTCTTTCTTT
LOC_Os08g01070
Os.6337.1.S1_at--2--6871Chr08:51852..51876 (25 bp)
GTTTGTTTGTCTGTTATTGATCACT
LOC_Os08g01070
Target Sequence 
ATCCACATGCACACTTTGGTGGTGGAGGCTTCCTCCCAAGGAATCCAGCTGCATCTGNGCTTCAATCGGCAGGGACAAGG
GGGTTTGTTGGAGCTTTCCCTCTCCCGCCAGCGGCAGTTGAAGCACAACGGCCGTTTCATGTGTTGGCACAAGCACAACA
GAAGCCAATATACGATCCATTTGTGCCGAGTGGTGCAGTAATGTCAGGAGGACCTGGAGGTGGAGGAGGAAGAAAAAGGA
AGACGGAGGATGACAAGGCTGAGTACGAGGATCTCATGGCGTCCGTTGGTGTCAAGTGACATATGCACTTTCTTTCTTGA
GAAGAGTTGGGATCTTTCTTTCTTTCTTGAGAAGAGTTCATTTGCTACNTAGTNTGACTTTATTAGACTACACTAGACTA
GAAGAGTATAGGATGAGTAATTTTGGCATTAAAGGATAGTAGAAGAGAAGAATGACTGAATGTTTGTTTGTCTGTTATTG
ATCACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6337.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis