Browse Element(s) Details


Os.46922.1.S1_at

Description gb:AK106602.1
DB_XREF= gi:32991811
TID=Os.46922.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.46922 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-112-C11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-112-C11, full insert sequence.
FL= gb:AK106602.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0108010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g01054Os.17519.1.S1_at11/118+29798..39772transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g01054Os.17519.2.S1_at10/118+29798..39772transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g01070Os.6337.1.S1_at11/118+47929..51980expressed protein
LOC_Os08g01080Os.46922.1.S1_at10/118+52251..57016expressed protein
LOC_Os08g01090Os.25169.1.S1_at10/118+57228..61492B3 DNA binding domain containing protein, expressed
LOC_Os08g01100Os.5767.1.S1_at11/118+64999..66368HMG box family protein, expressed
LOC_Os08g01110Os.18580.1.S1_at7/118+71957..77877expressed protein
LOC_Os08g01110Os.51348.1.S1_x_at2/118+71957..77877expressed protein
LOC_Os08g01120Os.54382.1.S1_at10/118+79988..81789Sulfate transporter family protein, expressed
LOC_Os08g01130Os.15223.1.S1_a_at11/118+80898..85561XPG I-region family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46922.1.S1_at--717--2931Chr08:55993..56017 (25 bp)
AAGGCAGCCTGAATACACTTCTCCA
LOC_Os08g01080
Os.46922.1.S1_at--574--1471Chr08:56025..56505 (25 bp)
AGAATGGTTGGTGCCTATGGTATAC
LOC_Os08g01080
Os.46922.1.S1_at--129--8591Chr08:56498..56522 (25 bp)
TGGTATACCATGAAACTCCCATATG
LOC_Os08g01080
Os.46922.1.S1_at--864--5891Chr08:56658..56682 (25 bp)
GAGCTTAGACTAACCAAGGTGCCAC
LOC_Os08g01080
Os.46922.1.S1_at--458--3151Chr08:56729..56753 (25 bp)
AATTGTTTTAGCTGCCGTGTGTCTA
LOC_Os08g01080
Os.46922.1.S1_at--1068--6891Chr08:56794..56818 (25 bp)
GTATGCGGGTACTTTCTTGGTTGCT
LOC_Os08g01080
Os.46922.1.S1_at--80--1431Chr08:56822..56846 (25 bp)
AGAAAGTGGAGTACATGCTGCCGCT
LOC_Os08g01080
Os.46922.1.S1_at--294--3831Chr08:56839..56863 (25 bp)
CTGCCGCTGCACTTTATTCAATAGA
LOC_Os08g01080
Os.46922.1.S1_at--714--8591Chr08:56898..56922 (25 bp)
TGGTGGTTGGTATTCTAAGGCCGCT
LOC_Os08g01080
Os.46922.1.S1_at--480--7051Chr08:56929..56953 (25 bp)
GTAAAAGAACGTCTGTTCTCTCGGT
LOC_Os08g01080
Os.46922.1.S1_at--1082--10131Chr08:57015..57034 (20 bp)
TATGCCTATAATGCTGTCATCATGG
NONE
Target Sequence 
AAGGCAGCCTGAATACACTTCTCCAAATGGACAGAATGGTTGGTGCCTATGGTATACCATGAAACTCCCATATGGNCGCG
GNACTGATGTANAAGATCCTNGTTTGGAAAGGGGGAGAGATGTATTGCNTAGCATCCNATCGGGGAAGTTGACAGAGAGG
AGCCTNTGCCTGATNTGTACTNATGGCATGANAGACNACCNNAAGGATGCTAGAGCTTAGACTAACCAAGGTGCCACGGN
ATAAGTAATGTTTTTTGAGGATTTTCTTTTTCTTTTTCCTNTGAATTGTTTTAGCTGCCGTGTGTCTATCCTNGATTATT
GGGGAAGAACATGCCATCAGTCAGGCGGGTATGCGGGTACTTTCTTGGTTGCTGCAAGAAAGTGGAGTACATGCTGCCGC
TGCACTTTATTCAATAGAAAGGGAATGTCTGTAAATATTGGGTCAGGTGTGGTGGTGGTTGGTATTCTAAGGCCGCTNTT
AATGTAAAAGAACGTCTGTTCTCTCGGTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGATCATATTAT
ATATTATGCCTATAATGCTGTCATCATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46922.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis