Browse Element(s) Details


Os.15223.1.S1_a_at

Description gb:AB074260.1
DB_XREF= gi:16923282
GEN=OsSEND-1
TID=Os.15223.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15223 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) OsSEND-1 gene for single-strand DNA endonuclease-1, complete cds.
PROD=single-strand DNA endonuclease-1
FL= gb:AB074260.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0113011/11XPG I-region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g01080Os.46922.1.S1_at10/118+52251..57016expressed protein
LOC_Os08g01090Os.25169.1.S1_at10/118+57228..61492B3 DNA binding domain containing protein, expressed
LOC_Os08g01100Os.5767.1.S1_at11/118+64999..66368HMG box family protein, expressed
LOC_Os08g01110Os.18580.1.S1_at7/118+71957..77877expressed protein
LOC_Os08g01110Os.51348.1.S1_x_at2/118+71957..77877expressed protein
LOC_Os08g01120Os.54382.1.S1_at10/118+79988..81789Sulfate transporter family protein, expressed
LOC_Os08g01130Os.15223.1.S1_a_at11/118+80898..85561XPG I-region family protein, expressed
LOC_Os08g01140Os.8012.1.S1_at11/118+89429..90590Cytochrome b561 family protein, expressed
LOC_Os08g01150Os.27612.1.S1_at11/118+95885..101033expressed protein
LOC_Os08g01160OsAffx.28969.1.S1_at11/118+102100..102900plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os08g01170Os.5629.1.S1_at11/118+103146..104028acetyltransferase, GNAT family protein, expressed
LOC_Os08g01180Os.11033.1.S1_at11/118+108885..114704Nicalin precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006281biological_processDNA repair
GO:0009408biological_processresponse to heat
GO:0004518molecular_functionnuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15223.1.S1_a_at--256--1411Chr08:81949..81973 (25 bp)
AGACTCTGACAGCAGCCTACACTGT
LOC_Os08g01130
Os.15223.1.S1_a_at--383--751Chr08:81913..81937 (25 bp)
ATGTAGTTGATCTGTCGTCTCCTTC
LOC_Os08g01130
Os.15223.1.S1_a_at--631--10591Chr08:81880..81904 (25 bp)
TTCGGAAGCTCTCCAAGTCCCAAAA
LOC_Os08g01130
Os.15223.1.S1_a_at--327--1411Chr08:81798..81822 (25 bp)
AGAAAGTAGTTTTAGCACGCAATCA
LOC_Os08g01130
Os.15223.1.S1_a_at--890--1711Chr08:81754..81778 (25 bp)
ACCAGCTGATTGATCTGTCTTCACC
LOC_Os08g01130
Os.15223.1.S1_a_at--324--5871Chr08:81691..81715 (25 bp)
GAGCCCTGGCAGACATAAGCAATGT
LOC_Os08g01130
Os.15223.1.S1_a_at--334--731Chr08:81670..81694 (25 bp)
ATGTTGGTTCACACAGCACTGAGAC
LOC_Os08g01130
Os.15223.1.S1_a_at--926--4971Chr08:81614..81638 (25 bp)
GCATCGGTCGGCCATGGAACCACCA
LOC_Os08g01130
Os.15223.1.S1_a_at--72--911Chr08:81561..81585 (25 bp)
AGGCGACAGATCAAGGGTTCATCAC
LOC_Os08g01130
Os.15223.1.S1_a_at--1004--1051Chr08:81503..81527 (25 bp)
AGGGACCTGAGAATGTTCCTGGACA
LOC_Os08g01130
Os.15223.1.S1_a_at--843--9271Chr08:81487..81511 (25 bp)
TCCTGGACAGCATACGGAACGAGCT
LOC_Os08g01130
Target Sequence 
AGACTCTGACAGCAGCCTACACTGTGGCTGTGGAAGATGTAGTTGATCTGTCGTCTCCTTCTCCTCCTCTTCGGAAGCTC
TCCAAGTCCCAAAAGAAGATGATGGCCGAGGATGTCAATGTGGCTGGTATGAACATGAACAAGATGGAGTCAGAAAGTAG
TTTTAGCACGCAATCAAGTACTAGTGATGTTGACAACCAGCTGATTGATCTGTCTTCACCCCTGGCTGGTGGTGATAATG
GTATGAAAGGTGGAAGAAGAGCCCTGGCAGACATAAGCAATGTTGGTTCACACAGCACTGAGACAGACGGAGGAGGAGGA
GGTGGTGGTGGTGTGGCATCGGTCGGCCATGGAACCACCATCGACCTATCTTCTCCGTCGCCGGCCATAGGCGACAGATC
AAGGGTTCATCACGATGATGATGATGTAATACACGAGAGGAAAGCAAGGGACCTGAGAATGTTCCTGGACAGCATACGGA
ACGAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15223.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis