Browse Element(s) Details


OsAffx.28969.1.S1_at

Description tigr:9636.m00016
TID=OsAffx.28969.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=BT003725 At5g15290
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0116011/11plant integral membrane protein TIGR01569 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g01110Os.18580.1.S1_at7/118+71957..77877expressed protein
LOC_Os08g01110Os.51348.1.S1_x_at2/118+71957..77877expressed protein
LOC_Os08g01120Os.54382.1.S1_at10/118+79988..81789Sulfate transporter family protein, expressed
LOC_Os08g01130Os.15223.1.S1_a_at11/118+80898..85561XPG I-region family protein, expressed
LOC_Os08g01140Os.8012.1.S1_at11/118+89429..90590Cytochrome b561 family protein, expressed
LOC_Os08g01150Os.27612.1.S1_at11/118+95885..101033expressed protein
LOC_Os08g01160OsAffx.28969.1.S1_at11/118+102100..102900plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os08g01170Os.5629.1.S1_at11/118+103146..104028acetyltransferase, GNAT family protein, expressed
LOC_Os08g01180Os.11033.1.S1_at11/118+108885..114704Nicalin precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28969.1.S1_at--55--3551Chr08:102223..102247 (25 bp)
CATCGCAAGGCTGGCAGTGGTAGCA
LOC_Os08g01160
OsAffx.28969.1.S1_at--1021--4671Chr08:102300..102324 (25 bp)
GCGGTGCTTGGGTCTGATAGACTTT
LOC_Os08g01160
OsAffx.28969.1.S1_at--712--2531Chr08:102409..102433 (25 bp)
AACTACTTCCAGTTCCGCGCCAGAT
LOC_Os08g01160
OsAffx.28969.1.S1_at--508--1232Chr08:102419..102443 (25 bp)
AGTTCCGCGCCAGATTCGACGACTT
LOC_Os08g01160
OsAffx.28969.1.S1_at--1025--10631Chr08:102442..102553 (25 bp)
TTCCCGGCTTTCGAGTTCTTCATTG
LOC_Os08g01160
OsAffx.28969.1.S1_at--1123--7831Chr08:102575..102599 (25 bp)
GGTACATGGTACTGTCGCTGCCCTT
LOC_Os08g01160
OsAffx.28969.1.S1_at--506--411Chr08:102613..102637 (25 bp)
ATCATGAGCTCCAAGGCCACCGGTG
LOC_Os08g01160
OsAffx.28969.1.S1_at--713--871Chr08:102626..102650 (25 bp)
AGGCCACCGGTGTCAAGCTTCTGCT
LOC_Os08g01160
OsAffx.28969.1.S1_at--934--1551Chr08:102641..102665 (25 bp)
AGCTTCTGCTGCTCATCTGCGACAC
LOC_Os08g01160
OsAffx.28969.1.S1_at--779--3351Chr08:102663..102687 (25 bp)
CACCATCATGGTGGGTTTACTGACG
LOC_Os08g01160
OsAffx.28969.1.S1_at--44--2571Chr08:102748..102772 (25 bp)
AACTGGGTGCCCATATGCTTGCAAT
LOC_Os08g01160
Target Sequence 
CATCGCAAGGCTGGCAGTGGTAGCAGCGACGTGCCGTTCCTGCTGCGCAGCGGCGGCAGCGGTGGCGACGGCCTCCGGCG
GTGCTTGGGTCTGATAGACTTTGTGCTGAGGGTGGCTGCCTTCGGCCCCACGCTGGCCGCCGCCATCTCCATCGGCACCT
CCGACGAGAGGCTCTCCGTCTTCACCAACTACTTCCAGTTCCGCGCCAGATTCGACGACTTCCCGGCTTTCGAGTTCTTC
ATTGTGGCGAATGCGATCGCGGCGGGGTACATGGTACTGTCGCTGCCCTTCTCCGCCGCCACCATCATGAGCTCCAAGGC
CACCGGTGTCAAGCTTCTGCTGCTCATCTGCGACACCATCATGGTGGGTTTACTGACGGCGGCAGCGTCTGCGGCGGCGG
CGATGGTGTACGTGGCGCACGAGGGCAACCTGCGCGCCAACTGGGTGCCCATATGCTTGCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28969.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis