Browse Element(s) Details


Os.8012.1.S1_at

Description gb:AK061172.1
DB_XREF= gi:32971190
TID=Os.8012.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.8012 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-305-D02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-209-B08, full insert sequence.
FL= gb:AK070102.1 gb:AK061172.1 gb:AK104211.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0114011/11Cytochrome b561 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g01100Os.5767.1.S1_at11/118+64999..66368HMG box family protein, expressed
LOC_Os08g01110Os.18580.1.S1_at7/118+71957..77877expressed protein
LOC_Os08g01110Os.51348.1.S1_x_at2/118+71957..77877expressed protein
LOC_Os08g01120Os.54382.1.S1_at10/118+79988..81789Sulfate transporter family protein, expressed
LOC_Os08g01130Os.15223.1.S1_a_at11/118+80898..85561XPG I-region family protein, expressed
LOC_Os08g01140Os.8012.1.S1_at11/118+89429..90590Cytochrome b561 family protein, expressed
LOC_Os08g01150Os.27612.1.S1_at11/118+95885..101033expressed protein
LOC_Os08g01160OsAffx.28969.1.S1_at11/118+102100..102900plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os08g01170Os.5629.1.S1_at11/118+103146..104028acetyltransferase, GNAT family protein, expressed
LOC_Os08g01180Os.11033.1.S1_at11/118+108885..114704Nicalin precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0016021cellular_componentintegral to membrane
GO:0005489molecular_functionelectron transporter activity
GO:0008805molecular_functioncarbon-monoxide oxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8012.1.S1_at--498--7571Chr08:89883..89907 (25 bp)
GGGCGGAGGCGCTACTCGTCAACTT
LOC_Os08g01140
Os.8012.1.S1_at--361--9911Chr08:89871..89895 (25 bp)
TACTCGTCAACTTCACGGCGCTGGT
LOC_Os08g01140
Os.8012.1.S1_at--1058--5691Chr08:89800..89824 (25 bp)
GACTCCACTAAATACACCGCCATGT
LOC_Os08g01140
Os.8012.1.S1_at--603--2171Chr08:89787..89811 (25 bp)
ACACCGCCATGTAATTCCATTTTAT
LOC_Os08g01140
Os.8012.1.S1_at--578--6392Chr08:89713..89737 (25 bp)
GATCGATCTAGCTACACACCCGTAG
LOC_Os08g01140
Os.8012.1.S1_at--865--1751Chr08:89687..89711 (25 bp)
ACGCAGTGTCGTACCATATATACAT
LOC_Os08g01140
Os.8012.1.S1_at--851--231Chr08:89670..89694 (25 bp)
ATATACATGCATCGCGCTGAGTGTG
LOC_Os08g01140
Os.8012.1.S1_at--950--4111Chr08:89637..89661 (25 bp)
CGCACGTGTCATGTGGCTTTGTGTA
LOC_Os08g01140
Os.8012.1.S1_at--658--10211Chr08:89599..89623 (25 bp)
TATTATTCCTCAATTCCATCGTGCA
LOC_Os08g01140
Os.8012.1.S1_at--967--10611Chr08:89586..89610 (25 bp)
TTCCATCGTGCATCTTTAATTACCA
LOC_Os08g01140
Os.8012.1.S1_at--436--231Chr08:89550..89574 (25 bp)
ATATATCTGGCCGAGTGTAAATACT
LOC_Os08g01140
Target Sequence 
GGGCGGAGGCGCTACTCGTCAACTTCACGGCGCTGGTGGTCCTCCTCCTCGGCGTCGCCGTCGTCCTCGCCACCGCCAAC
GTNGACTCCACTAAATACACCGCCATGTAATTCCATTTTATTATACATATATTTCATCATCTTTTCTTTATTATTACTCT
ACATATAATCGATCGATCTAGCTACACACCCGTAGTACGCAGTGTCGTACCATATATACATGCATCGCGCTGAGTGTGTG
CGCGCGCGCACGTGTCATGTGGCTTTGTGTAATTAATTAATTATTATTATTCCTCAATTCCATCGTGCATCTTTAATTAC
CATGCATGTATATATATATATCTGGCCGAGTGTAAATACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8012.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis