Browse Element(s) Details


Os.5629.1.S1_at

Description gb:AK068156.1
DB_XREF= gi:32978174
TID=Os.5629.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5629 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013130K21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013130K21, full insert sequence.
FL= gb:AK068156.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0117011/11acetyltransferase, GNAT family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g01120Os.54382.1.S1_at10/118+79988..81789Sulfate transporter family protein, expressed
LOC_Os08g01130Os.15223.1.S1_a_at11/118+80898..85561XPG I-region family protein, expressed
LOC_Os08g01140Os.8012.1.S1_at11/118+89429..90590Cytochrome b561 family protein, expressed
LOC_Os08g01150Os.27612.1.S1_at11/118+95885..101033expressed protein
LOC_Os08g01160OsAffx.28969.1.S1_at11/118+102100..102900plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os08g01170Os.5629.1.S1_at11/118+103146..104028acetyltransferase, GNAT family protein, expressed
LOC_Os08g01180Os.11033.1.S1_at11/118+108885..114704Nicalin precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0008080molecular_functionN-acetyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5629.1.S1_at--802--2871Chr08:103518..103542 (25 bp)
AAGGGCGTCTCCAACATCGCGCTCT
LOC_Os08g01170
Os.5629.1.S1_at--549--4071Chr08:103489..103513 (25 bp)
CGAGCCCCGCGTCGTGGGATTCTAC
LOC_Os08g01170
Os.5629.1.S1_at--64--7591Chr08:103426..103450 (25 bp)
GGGCATGGCCTTCTACCGCTCAAGG
LOC_Os08g01170
Os.5629.1.S1_at--996--3631Chr08:103417..103441 (25 bp)
CTTCTACCGCTCAAGGCAACAAATA
LOC_Os08g01170
Os.5629.1.S1_at--31--2091Chr08:103399..103423 (25 bp)
ACAAATACAAAACACCTCCTCCTAG
LOC_Os08g01170
Os.5629.1.S1_at--169--10571Chr08:103358..103382 (25 bp)
TTCTTCTCCGATCAATATATCCAAA
LOC_Os08g01170
Os.5629.1.S1_at--515--2691Chr08:103285..103309 (25 bp)
AAGCTGATTATTATTGTCTAGACAC
LOC_Os08g01170
Os.5629.1.S1_at--1090--3291Chr08:103228..103252 (25 bp)
CAAATACATATGTAGTTGCAGCTGA
LOC_Os08g01170
Os.5629.1.S1_at--342--8831Chr08:103206..103230 (25 bp)
TGATTGCAACCAGTAATCCATTCCA
LOC_Os08g01170
Os.5629.1.S1_at--841--4831Chr08:103169..103193 (25 bp)
GCTAATTACACTTCATTCTTGTTTT
LOC_Os08g01170
Os.5629.1.S1_at--613--10551Chr08:103158..103182 (25 bp)
TTCATTCTTGTTTTACCTCTCTCTC
LOC_Os08g01170
Target Sequence 
AAGGGCGTCTCCAACATCGCGCTCTACGCCGAGCCCCGCGTCGTGGGATTCTACCGCCTCCTNGGCTTCGCCATGGACCC
CGACGCCATCAGGGGCATGGCCTTCTACCGCTCAAGGCAACAAATACAAAACACCTCCTCCTAGCTCCTTTTCTATCTTC
TTCTTCTCCGATCAATATATCCAAAACACATATTGGATTGCATATTAATTTGCATGTGTATGTATGTATATTCAAGCTGA
TTATTATTGTCTAGACACACACACACACATGCAGAGTGAAATCAACTCATCAAATACATATGTAGTTGCAGCTGATTGCA
ACCAGTAATCCATTCCATTCANNANANNNGCTAATTACACTTCATTCTTGTTTTACCTCTCTCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5629.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis