Browse Element(s) Details


Os.27612.1.S1_at

Description gb:AK120555.1
DB_XREF= gi:37990178
TID=Os.27612.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27612 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013130O10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013130O10, full insert sequence.
FL= gb:AK120555.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0115011/11expressed protein
LOC_Os09g200401/11NB-ARC domain containing protein, expressed
LOC_Os06g076201/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g01110Os.18580.1.S1_at7/118+71957..77877expressed protein
LOC_Os08g01110Os.51348.1.S1_x_at2/118+71957..77877expressed protein
LOC_Os08g01120Os.54382.1.S1_at10/118+79988..81789Sulfate transporter family protein, expressed
LOC_Os08g01130Os.15223.1.S1_a_at11/118+80898..85561XPG I-region family protein, expressed
LOC_Os08g01140Os.8012.1.S1_at11/118+89429..90590Cytochrome b561 family protein, expressed
LOC_Os08g01150Os.27612.1.S1_at11/118+95885..101033expressed protein
LOC_Os08g01160OsAffx.28969.1.S1_at11/118+102100..102900plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os08g01170Os.5629.1.S1_at11/118+103146..104028acetyltransferase, GNAT family protein, expressed
LOC_Os08g01180Os.11033.1.S1_at11/118+108885..114704Nicalin precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27612.1.S1_at--769--4211Chr08:100489..100513 (25 bp)
CCGCGACCGCGACTTCATGATGCAG
LOC_Os08g01150
Os.27612.1.S1_at--628--1071Chr08:100517..100541 (25 bp)
AGGGAGCAGTACGTGGCCGACTACC
LOC_Os08g01150
Os.27612.1.S1_at--463--3272Chr08:100588..100612 (25 bp)
CAACATGGCCCACAGGGATGCCGAG
LOC_Os08g01150
Os.27612.1.S1_at--708--7651Chr08:100602..100626 (25 bp)
GGGATGCCGAGGTGCTCAGCAACAT
LOC_Os08g01150
Os.27612.1.S1_at--1033--6411Chr08:100636..100660 (25 bp)
GATCATAACGGAGGACAAGCACAAT
LOC_Os08g01150
Os.27612.1.S1_at--512--9071Chr08:100691..100715 (25 bp)
TGCTTGCTGCTGTAATTGTTTCCTT
LOC_Os08g01150
Os.27612.1.S1_at--979--9971Chr08:100741..100765 (25 bp)
TACCACGTGCTGTTACTGTACTAGT
LOC_Os08g01150
Os.27612.1.S1_at--830--6791Chr08:100802..100826 (25 bp)
GTTATTGTATCATGTAGGCGCGCAC
LOC_Os08g01150
Os.27612.1.S1_at--264--6011Chr08:100815..100839 (25 bp)
GTAGGCGCGCACACTTAATTAAACA
LOC_Os08g01150
Os.27612.1.S1_at--300--6091Chr08:100894..100918 (25 bp)
GAGTACGAGATCTGGCTAGCTCCTT
LOC_Os08g01150
Os.27612.1.S1_at--803--51115Chr11:7416899..7417025 (25 bp)
GCACATTCGCAACTATATTTTTTAT
NONE
Target Sequence 
CCGCGACCGCGACTTCATGATGCAGTCCAGGGAGCAGTACGTGGCCGACTACCAGCCCTGCACCATTCCACCGCCGCCGC
TCACCGCCGATGACGCCACCAACATGGCCCACAGGGATGCCGAGGTGCTCAGCAACATCGACAAGATGATCATAACGGAG
GACAAGCACAATTAACCAATAATAACATATTTCTTAATTATGTGCTTGCTGCTGTAATTGTTTCCTTCATTTCATAAATA
AATATGATATATTACCACGTGCTGTTACTGTACTAGTGTTGATTTAGCATGACAAATTGAATATCCATTCTCAGTTATTG
TATCATGTAGGCGCGCACACTTAATTAAACAGAGGAGAACAAATTAAAGCGGAGTACAATAGCTAGCTAGTTTGCCAATA
AAGCAGAGTACGAGATCTGGCTAGCTCCTTTGCACATTCGCAACTATATTTTTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27612.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis