Browse Element(s) Details


Os.50542.1.S1_at

Description gb:AK121712.1
DB_XREF= gi:37991335
TID=Os.50542.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50542 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033078H12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033078H12, full insert sequence.
FL= gb:AK121712.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3381011/11Biotin/lipoate A/B protein ligase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g33800NANA8+21022682..21024933Myb-like DNA-binding domain containing protein
LOC_Os08g33810Os.50542.1.S1_at11/118+21032164..21036917Biotin/lipoate A/B protein ligase family protein, expressed
LOC_Os08g33820Os.7890.2.S1_x_at11/118+21038387..21039838Chlorophyll a-b binding protein 4, chloroplast precursor, putative, expressed
LOC_Os08g33820Os.7890.1.S1_a_at11/118+21038387..21039838Chlorophyll a-b binding protein 4, chloroplast precursor, putative, expressed
LOC_Os08g33820Os.7890.1.S1_x_at11/118+21038387..21039838Chlorophyll a-b binding protein 4, chloroplast precursor, putative, expressed
LOC_Os08g33830Os.10076.1.S1_at11/118+21040577..21046359Polypyrimidine tract-binding protein homolog 1, putative, expressed
LOC_Os08g33840OsAffx.6017.1.S1_at10/118+21052165..21053716hypothetical protein
LOC_Os08g33840OsAffx.20927.1.S1_x_at2/118+21052165..21053716hypothetical protein
LOC_Os08g33840OsAffx.26904.1.S1_x_at1/118+21052165..21053716hypothetical protein
LOC_Os08g33840OsAffx.20927.2.S1_at1/118+21052165..21053716hypothetical protein
LOC_Os08g33850Os.5241.1.S1_at11/118+21057383..21061481GDA1/CD39 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50542.1.S1_at--741--10531Chr08:21032938..21032962 (25 bp)
TTCTAACCACACTCTTTTTGACCTG
LOC_Os08g33810
Os.50542.1.S1_at--510--8931Chr08:21032920..21032944 (25 bp)
TGACCTGTGTTAACCTGTTCTTCAT
LOC_Os08g33810
Os.50542.1.S1_at--86--8791Chr08:21032905..21032929 (25 bp)
TGTTCTTCATTCCTCAACCATAGTA
LOC_Os08g33810
Os.50542.1.S1_at--480--1691Chr08:21032830..21032854 (25 bp)
AGCCAGTGCCCAGTAACCCAAAGTG
LOC_Os08g33810
Os.50542.1.S1_at--789--8891Chr08:21032795..21032819 (25 bp)
TGAGTGATCCCCTGCTCCAAATTAT
LOC_Os08g33810
Os.50542.1.S1_at--259--6391Chr08:21032634..21032658 (25 bp)
GATCGAGCTGATCACAGTCATGGAT
LOC_Os08g33810
Os.50542.1.S1_at--123--1171Chr08:21032619..21032643 (25 bp)
AGTCATGGATCGACCAGCCAGGGCG
LOC_Os08g33810
Os.50542.1.S1_at--554--4811Chr08:21032579..21032603 (25 bp)
GCTCTGCTTGATCTGGATAGGCTCC
LOC_Os08g33810
Os.50542.1.S1_at--626--1551Chr08:21032524..21032548 (25 bp)
AGCTTGTACTGTTACTTGCGTGTGC
LOC_Os08g33810
Os.50542.1.S1_at--823--8011Chr08:21032429..21032453 (25 bp)
GGAGGTCGCCATGGATAACGGACAA
LOC_Os08g33810
Os.50542.1.S1_at--111--8151Chr08:21032410..21032434 (25 bp)
GGACAAAAGGCCATCGCGTCATGCA
LOC_Os08g33810
Target Sequence 
TTCTAACCACACTCTTTTTGACCTGTGTTAACCTGTTCTTCATTCCTCAACCATAGTATGTGATATGTCCAGAGCAGTCA
AGCAGAAGCTCTCCTTGTCACCACCACCAGCCAGTGCCCAGTAACCCAAAGTGGCAGGCAGCCTGAGTGATCCCCTGCTC
CAAATTATTCCCCTCTGCCAATCCTAAGCAGATCGAGCTGATCACAGTCATGGATCGACCAGCCAGGGCGGCCGGCCGTG
TGGCTGCTCTGCTTGATCTGGATAGGCTCCGGGGGAGGAGAAAGACTGAGAGAGAATAGTAGCTTGTACTGTTACTTGCG
TGTGCCCCCACAAACCTGCAGGATCACACGGGGGGAGCGAGGGGGCGTGTGATGGATGGATGGATGCGGGATGGAGGAGG
TCGCCATGGATAACGGACAAAAGGCCATCGCGTCATGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50542.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis