Browse Element(s) Details


Os.7890.1.S1_a_at

Description gb:AY445626.1
DB_XREF= gi:38374125
TID=Os.7890.1
CNT=910
FEA=FLmRNA
TIER=FL+Stack
STK=29
UG=Os.7890 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) chlorophyll ab binding protein presusor mRNA, complete cds; nuclear gene for chloroplast product.
PROD=chlorophyll ab binding protein presusor
FL= gb:AK104499.1 gb:AK104416.1 gb:AK060265.1 gb:AK103921.1 gb:AK067809.1 gb:AK067712.1 gb:AF094775.1 gb:AY445626.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3382011/11Chlorophyll a-b binding protein 4, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g33800NANA8+21022682..21024933Myb-like DNA-binding domain containing protein
LOC_Os08g33810Os.50542.1.S1_at11/118+21032164..21036917Biotin/lipoate A/B protein ligase family protein, expressed
LOC_Os08g33820Os.7890.2.S1_x_at11/118+21038387..21039838Chlorophyll a-b binding protein 4, chloroplast precursor, putative, expressed
LOC_Os08g33820Os.7890.1.S1_a_at11/118+21038387..21039838Chlorophyll a-b binding protein 4, chloroplast precursor, putative, expressed
LOC_Os08g33820Os.7890.1.S1_x_at11/118+21038387..21039838Chlorophyll a-b binding protein 4, chloroplast precursor, putative, expressed
LOC_Os08g33830Os.10076.1.S1_at11/118+21040577..21046359Polypyrimidine tract-binding protein homolog 1, putative, expressed
LOC_Os08g33840OsAffx.6017.1.S1_at10/118+21052165..21053716hypothetical protein
LOC_Os08g33840OsAffx.20927.1.S1_x_at2/118+21052165..21053716hypothetical protein
LOC_Os08g33840OsAffx.26904.1.S1_x_at1/118+21052165..21053716hypothetical protein
LOC_Os08g33840OsAffx.20927.2.S1_at1/118+21052165..21053716hypothetical protein
LOC_Os08g33850Os.5241.1.S1_at11/118+21057383..21061481GDA1/CD39 family protein, expressed
LOC_Os08g33860Os.5671.1.S1_at11/118+21062021..21067288zinc finger family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009768biological_processphotosynthesis, light harvesting in photosystem I
GO:0015979biological_processphotosynthesis
GO:0009782cellular_componentphotosystem I antenna complex
GO:0030076cellular_componentlight-harvesting complex
GO:0016168molecular_functionchlorophyll binding
GO:0031409molecular_functionpigment binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7890.1.S1_a_at--443--1131Chr08:21039107..21039131 (25 bp)
AGTGCGGCTACCCCGGCAGCGTCTT
LOC_Os08g33820
Os.7890.1.S1_a_at--294--9331Chr08:21038942..21039059 (25 bp)
TCGCCAACGGGAGGCTGGCGATGCT
LOC_Os08g33820
Os.7890.1.S1_a_at--672--8591Chr08:21038900..21038924 (25 bp)
TGGTGCAGCACAACGTGACGCAGAA
LOC_Os08g33820
Os.7890.1.S1_a_at--485--1831Chr08:21038814..21038838 (25 bp)
ACGCTGTCAGGCTGAGCGTGTGATC
LOC_Os08g33820
Os.7890.1.S1_a_at--1128--7111Chr08:21038809..21038833 (25 bp)
GTCAGGCTGAGCGTGTGATCGATTT
LOC_Os08g33820
Os.7890.1.S1_a_at--1087--8331Chr08:21038805..21038829 (25 bp)
GGCTGAGCGTGTGATCGATTTCATC
LOC_Os08g33820
Os.7890.1.S1_a_at--971--3991Chr08:21038798..21038822 (25 bp)
CGTGTGATCGATTTCATCAGGGCCA
LOC_Os08g33820
Os.7890.1.S1_a_at--728--8671Chr08:21038796..21038820 (25 bp)
TGTGATCGATTTCATCAGGGCCAGG
LOC_Os08g33820
Os.7890.1.S1_a_at--127--10771Chr08:21038538..21038562 (25 bp)
TTGAGTGGTGAATTTCTGATGTACA
LOC_Os08g33820
Os.7890.1.S1_a_at--539--7751Chr08:21038532..21038556 (25 bp)
GGTGAATTTCTGATGTACAGTACTA
LOC_Os08g33820
Os.7890.1.S1_a_at--420--171Chr08:21038527..21038551 (25 bp)
ATTTCTGATGTACAGTACTACAGGG
LOC_Os08g33820
Target Sequence 
AGTGCGGCTACCCCGGCAGCGTCTTNCAACCCCCTCAACTTCGAGCCCACCCTCGAGGNNCCAAGGAGAAGGAGCTCGCC
AACGGGAGGCTGGCGATGCTGGCGTTCTTGGGGTTCCTGGTGCAGCACAACGTGACGCAGAAGGGGCCCTTCGACAACCT
GCTGCAGCACCTGTNCTGACCCGTGGCACAACACCATCATCCAGACGCTGTCAGGCTGAGCGTGTGATCGATTTCATCAG
GGCCAGGGCATCTCAAGGAGCTTGATGAGTTCAGGCTGGTGAAACCGATGATTGGGCGATGGAAAGATGTTCTCTTCTTG
TTTCTTCTTTTTTTTTTTTTTNNGTGGAGTATGCATGTATAAGATGTTAATGAATTGGGGGGAGGAGAGAGAGAGAGAGA
TGGATGTGATGAGATTCAGACTTACTGTGTGTGTTGTGGTAATTGTTTCCTGCATGCATGGATCTGGATGCATGGGTGAG
GGGGTGAGTTGAGTGGTGAATTTCTGATGTACAGTACTACAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7890.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis